NR_2.5_83717.110

Members (26)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4YBB\|1\|DA (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
2	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
3	8B0X\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli B	Bacteria	RF02541	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	Electron microscopy	1.55	2022-11-30
4	7QQ3\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli K-12	Bacteria	RF02541	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	Electron microscopy	2.1	2023-01-18
5	8AYE\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	Electron microscopy	1.96	2023-03-01
6	7ZP8\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	Electron microscopy	2.2	2022-08-10
7	7K00\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	2020-09-23
8	6XZ7\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	Electron microscopy	2.1	2020-07-22
9	7Z20\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	Electron microscopy	2.29	2022-08-10
10	7LVK\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified 50S subunit from Escherichia coli	Electron microscopy	2.2	2021-12-15
11	6PJ6\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High resolution cryo-EM structure of E.coli 50S	Electron microscopy	2.2	2020-01-22
12	8ANA\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	Electron microscopy	2.1	2023-03-08
13	7N1P\|1\|23	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	2021-07-14
14	7PJS\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	2021-10-20
15	7S1H\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	2021-11-17
16	7S1K\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	2022-01-19
17	7O1A\|1\|BA	Large subunit ribosomal RNA	Ribosomal RNA 23S	Escherichia coli K-12	Bacteria	RF02541	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	2021-09-01
18	8EIU\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	Electron microscopy	2.24	2023-02-01
19	7S1J\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	2022-03-02
20	7S1I\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	2022-03-02
21	7S1G\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	2021-11-17
22	8AKN\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	Electron microscopy	2.3	2023-03-08
23	7BL4\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli K-12	Bacteria	RF02541	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	Electron microscopy	2.4	2021-05-12
24	6PCR\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 40o	Electron microscopy	2.5	2020-06-17
25	6PC6\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 47	Electron microscopy	2.5	2020-06-17
26	6PC7\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 46	Electron microscopy	2.5	2020-06-17

Release history

Release	3.273	3.274
Date	2023-03-08	2023-03-15

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_2.5_83717.110	NR_2.5_83717.109	3.273	(24) 7S1G\|1\|I, 7QQ3\|1\|I, 7PJS\|1\|A, 7O1A\|1\|BA, 7N1P\|1\|23, 7LVK\|1\|I, 7K00\|1\|a, 7BL4\|1\|A, 8EIU\|1\|a, 6XZ7\|1\|A, 8B0X\|1\|a, 6PJ6\|1\|I, 8AYE\|1\|a, 6PCR\|1\|I, 7ZP8\|1\|b, 6PC7\|1\|I, 7Z20\|1\|b, 6PC6\|1\|I, 7S1K\|1\|I, 4YBB\|1\|DA, 7S1J\|1\|I, 4YBB\|1\|CA, 7S1I\|1\|I, 7S1H\|1\|I	(2) 8AKN\|1\|a, 8ANA\|1\|a	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_2.5_83717.110	NR_2.5_83717.111	3.275	(26) 6PCR\|1\|I, 7ZP8\|1\|b, 6PC7\|1\|I, 7Z20\|1\|b, 6PC6\|1\|I, 7S1K\|1\|I, 4YBB\|1\|DA, 7S1J\|1\|I, 4YBB\|1\|CA, 7S1I\|1\|I, 7S1H\|1\|I, 7S1G\|1\|I, 7QQ3\|1\|I, 7PJS\|1\|A, 7O1A\|1\|BA, 7N1P\|1\|23, 8EIU\|1\|a, 7LVK\|1\|I, 8B0X\|1\|a, 7K00\|1\|a, 8AYE\|1\|a, 7BL4\|1\|A, 8ANA\|1\|a, 6XZ7\|1\|A, 6PJ6\|1\|I, 8AKN\|1\|a	(0)	(1) 8G6X\|1\|a

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4YBB\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2883
2	6XZ7\|1\|A	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	ELECTRON MICROSCOPY	2.1	2876
3	8AKN\|1\|a	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	ELECTRON MICROSCOPY	2.3	2731
4	8ANA\|1\|a	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	ELECTRON MICROSCOPY	2.1	2714
5	8AYE\|1\|a	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	ELECTRON MICROSCOPY	1.96	2731
6	7K00\|1\|a	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	2729
7	8EIU\|1\|a	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	ELECTRON MICROSCOPY	2.24	2729
8	7N1P\|1\|23	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	2882
9	7S1J\|1\|I	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	2876
10	7S1I\|1\|I	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	2874
11	7S1G\|1\|I	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	2874
12	7S1H\|1\|I	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	2876
13	7S1K\|1\|I	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	2875
14	8B0X\|1\|a	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	ELECTRON MICROSCOPY	1.55	2724
15	7Z20\|1\|b	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.29	2901
16	7ZP8\|1\|b	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.2	2901
17	7O1A\|1\|BA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	2874
18	7PJS\|1\|A	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	2880
19	7BL4\|1\|A	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	ELECTRON MICROSCOPY	2.4	2897
20	7QQ3\|1\|I	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	ELECTRON MICROSCOPY	2.1	2880
21	6PC6\|1\|I	E. coli 50S ribosome bound to compound 47	ELECTRON MICROSCOPY	2.5	2876
22	6PCR\|1\|I	E. coli 50S ribosome bound to compound 40o	ELECTRON MICROSCOPY	2.5	2876
23	6PC7\|1\|I	E. coli 50S ribosome bound to compound 46	ELECTRON MICROSCOPY	2.5	2876
24	6PJ6\|1\|I	High resolution cryo-EM structure of E.coli 50S	ELECTRON MICROSCOPY	2.2	2874
25	7LVK\|1\|I	Cfr-modified 50S subunit from Escherichia coli	ELECTRON MICROSCOPY	2.2	2876
26	4YBB\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2876

Equivalence class NR_2.5_83717.110 Obsolete

Release history

Parents

Children