BGSU RNA Site //

Equivalence class NR_2.5_83717.91 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14YBB|1|DA (rep)Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
24YBB|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
37K00|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.982020-09-23
46XZ7|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).Electron microscopy2.12020-07-22
57LVK|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cfr-modified 50S subunit from Escherichia coliElectron microscopy2.22021-12-15
66PJ6|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High resolution cryo-EM structure of E.coli 50SElectron microscopy2.22020-01-22
77N1P|1|23Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationElectron microscopy2.332021-07-14
87PJS|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)Electron microscopy2.352021-10-20
97S1H|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Wild-type Escherichia coli ribosome with antibiotic linezolidElectron microscopy2.352021-11-17
107S1K|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.422022-01-19
117O1A|1|BALarge subunit ribosomal RNARibosomal RNA 23SEscherichia coli K-12BacteriaRF02541Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
127S1J|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Wild-type Escherichia coli ribosome with antibiotic radezolidElectron microscopy2.472022-03-02
137S1I|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Wild-type Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.482022-03-02
147S1G|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541wild-type Escherichia coli stalled ribosome with antibiotic linezolidElectron microscopy2.482021-11-17
157BL4|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coli K-12BacteriaRF02541in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleElectron microscopy2.42021-05-12
166PCR|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 40oElectron microscopy2.52020-06-17
176PC6|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 47Electron microscopy2.52020-06-17
186PC7|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 46Electron microscopy2.52020-06-17

Release history

Release3.2223.2233.2243.2253.2263.227
Date2022-03-162022-03-232022-03-302022-04-062022-04-132022-04-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_83717.91NR_2.5_83717.903.222(18) 4YBB|1|CA, 7S1J|1|I, 7S1I|1|I, 7S1H|1|I, 7S1G|1|I, 7PJS|1|A, 7O1A|1|BA, 7N1P|1|23, 7LVK|1|I, 7K00|1|a, 7BL4|1|A, 6XZ7|1|A, 6PJ6|1|I, 6PCR|1|I, 6PC7|1|I, 6PC6|1|I, 4YBB|1|DA, 7S1K|1|I(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_83717.91NR_2.5_83717.923.228(18) 4YBB|1|CA, 7S1J|1|I, 7S1I|1|I, 7S1H|1|I, 7S1G|1|I, 7PJS|1|A, 7O1A|1|BA, 7N1P|1|23, 7LVK|1|I, 7K00|1|a, 7BL4|1|A, 6XZ7|1|A, 6PJ6|1|I, 6PCR|1|I, 6PC7|1|I, 6PC6|1|I, 4YBB|1|DA, 7S1K|1|I(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14YBB|1|CAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12876
27LVK|1|ICfr-modified 50S subunit from Escherichia coliELECTRON MICROSCOPY2.22876
36PJ6|1|IHigh resolution cryo-EM structure of E.coli 50SELECTRON MICROSCOPY2.22874
46PC7|1|IE. coli 50S ribosome bound to compound 46ELECTRON MICROSCOPY2.52876
56PCR|1|IE. coli 50S ribosome bound to compound 40oELECTRON MICROSCOPY2.52876
66PC6|1|IE. coli 50S ribosome bound to compound 47ELECTRON MICROSCOPY2.52876
77BL4|1|Ain vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleELECTRON MICROSCOPY2.42897
87O1A|1|BACryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.42874
97PJS|1|AStructure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)ELECTRON MICROSCOPY2.352880
107S1J|1|IWild-type Escherichia coli ribosome with antibiotic radezolidELECTRON MICROSCOPY2.472876
117S1K|1|ICfr-modified Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.422875
127S1H|1|IWild-type Escherichia coli ribosome with antibiotic linezolidELECTRON MICROSCOPY2.352876
137S1G|1|Iwild-type Escherichia coli stalled ribosome with antibiotic linezolidELECTRON MICROSCOPY2.482874
147S1I|1|IWild-type Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.482874
157N1P|1|23Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationELECTRON MICROSCOPY2.332882
167K00|1|aStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.982729
176XZ7|1|AE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.12876
184YBB|1|DAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12883
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