BGSU RNA Site //

Equivalence class NR_2.5_89429.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14FEN|1|B (rep)Purine riboswitchA24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainRF00167Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-ray diffraction1.352013-02-27
24FEO|1|BPurine riboswitchU25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainRF00167Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurineX-ray diffraction1.62013-02-27
34FEL|1|BPurine riboswitchU25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainRF00167Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-ray diffraction1.62013-02-27
44FEP|1|BPurine riboswitchA24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainRF00167Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurineX-ray diffraction1.652013-02-27
54FEJ|1|BPurine riboswitchA24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainRF00167Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-ray diffraction1.52013-02-27
64FE5|1|BPurine riboswitchxpt-pbuX guanine riboswitch aptamer domainRF00167Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-ray diffraction1.322012-06-27
72XNZ|1|APurine riboswitchGuanine riboswitchBacillus subtilisBacteriaRF00167xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screeningX-ray diffraction1.592011-04-06
82XNW|1|APurine riboswitchGUANINE RIBOSWITCHBacillus subtilisBacteriaRF00167XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENINGX-ray diffraction1.52011-04-06
96UBU|1|BPurine riboswitchGuanine riboswitch aptamer domainBacillus subtilisBacteriaRF001671.60 A resolution structure of the guanine riboswitch bound to guanineX-ray diffraction1.62020-07-22
106UC7|1|BPurine riboswitchguanine riboswitchBacillus subtilisBacteriaRF00167Structure of guanine riboswitch bound to N2-acetyl guanineX-ray diffraction1.82020-07-22
113GOT|1|APurine riboswitchGuanine riboswitchRF00167Guanine riboswitch C74U mutant bound to 2-fluoroadenine.X-ray diffraction1.952009-06-23
126UC9|1|BPurine riboswitchGuanine riboswitchBacillus subtilisBacteriaRF00167Guanine riboswitch bound to O6-cyclohexylmethyl guanineX-ray diffraction1.942020-07-22
136UC8|1|BPurine riboswitchGuanine riboswitchBacillus subtilisBacteriaRF00167Guanine riboswitch bound to 8-aminoguanineX-ray diffraction1.92020-07-22
142G9C|1|APurine riboswitchguanine riboswitchRF00167Modified pyrimidines Specifically bind the purine riboswitchX-ray diffraction1.72006-11-21
153GAO|1|APurine riboswitchGuanine riboswitchRF00167Crystal structure of the guanine riboswitch bound to xanthine.X-ray diffraction1.92009-06-23
163GER|1|APurine riboswitchGuanine riboswitchRF00167Guanine riboswitch bound to 6-chloroguanineX-ray diffraction1.72009-06-23
172EES|1|APurine riboswitchGuanine riboswitchRF00167Guanine riboswitch A21U, U75A mutant bound to hypoxanthineX-ray diffraction1.752007-11-13
183GOG|1|APurine riboswitchGuanine riboswitchRF00167Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanineX-ray diffraction2.12009-06-23
193DS7|1|APurine riboswitch67-MERRF00167Structure of an RNA-2'-deoxyguanosine complexX-ray diffraction1.852009-02-17
202EET|1|APurine riboswitchGuanine RiboswitchRF00167Guanine Riboswitch A21G, U75C mutant bound to hypoxanthineX-ray diffraction1.952007-11-13
213FO4|1|APurine riboswitchGuanine riboswitch C74U mutantRF00167Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanineX-ray diffraction1.92009-06-23
222EEV|1|APurine riboswitchguanine riboswitchRF00167Guanine riboswitch U22C, A52G mutant bound to hypoxanthineX-ray diffraction1.952007-11-13
233DS7|1|BPurine riboswitch67-MERRF00167Structure of an RNA-2'-deoxyguanosine complexX-ray diffraction1.852009-02-17
243FO6|1|APurine riboswitchGuanine riboswitchRF00167Crystal structure of guanine riboswitch bound to 6-O-methylguanineX-ray diffraction1.92009-06-23
253G4M|1|APurine riboswitchGuanine riboswitchRF00167Crystal structure of guanine riboswitch bound to 2-aminopurineX-ray diffraction2.42009-06-23
263GES|1|APurine riboswitchGuanine riboswitchRF00167Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanineX-ray diffraction2.152009-06-23
272B57|1|APurine riboswitch65-MERRF00167Guanine Riboswitch C74U mutant bound to 2,6-diaminopurineX-ray diffraction2.152006-05-23
282EEW|1|APurine riboswitchGuanine riboswitchRF00167Guanine Riboswitch U47C mutant bound to hypoxanthineX-ray diffraction2.252007-11-13
292EEU|1|APurine riboswitchGuanine riboswitchRF00167Guanine riboswitch U22A, A52U mutant bound to hypoxanthineX-ray diffraction1.952007-11-13
302XO1|1|APurine riboswitchGuanine riboswitchBacillus subtilisBacteriaRF00167xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenineX-ray diffraction1.62011-04-06
311U8D|1|Axpt-pbuX mRNAGuanine riboswitch bound to hypoxanthineX-ray diffraction1.952004-11-23

Release history

Release3.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.150
Date2020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_89429.4NR_2.5_89429.33.136(27) 4FE5|1|B, 2EEV|1|A, 3FO4|1|A, 3GOT|1|A, 2EEU|1|A, 3DS7|1|B, 3GOG|1|A, 2EET|1|A, 3DS7|1|A, 3GES|1|A, 2EES|1|A, 4FEP|1|B, 2XO1|1|A, 2B57|1|A, 4FEO|1|B, 2XNZ|1|A, 3GER|1|A, 1U8D|1|A, 4FEN|1|B, 2XNW|1|A, 3GAO|1|A, 4FEL|1|B, 2G9C|1|A, 3G4M|1|A, 4FEJ|1|B, 2EEW|1|A, 3FO6|1|A(4) 6UC8|1|B, 6UC7|1|B, 6UBU|1|B, 6UC9|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_89429.4NR_2.5_89429.53.151(30) 2EEV|1|A, 4FE5|1|B, 3FO6|1|A, 6UC9|1|B, 2G9C|1|A, 4FEL|1|B, 3GAO|1|A, 2XNZ|1|A, 4FEO|1|B, 2EES|1|A, 3GES|1|A, 3DS7|1|A, 6UBU|1|B, 2EEU|1|A, 3GOT|1|A, 3FO4|1|A, 6UC8|1|B, 2EEW|1|A, 4FEJ|1|B, 3G4M|1|A, 2XNW|1|A, 4FEN|1|B, 2B57|1|A, 3GER|1|A, 2XO1|1|A, 4FEP|1|B, 2EET|1|A, 3GOG|1|A, 3DS7|1|B, 6UC7|1|B(1) 1U8D|1|A(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16UC7|1|BStructure of guanine riboswitch bound to N2-acetyl guanineX-RAY DIFFRACTION1.867
24FEO|1|BCrystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurineX-RAY DIFFRACTION1.667
34FEN|1|BCrystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-RAY DIFFRACTION1.3567
44FEP|1|BCrystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurineX-RAY DIFFRACTION1.6567
54FEL|1|BCrystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-RAY DIFFRACTION1.667
63G4M|1|ACrystal structure of guanine riboswitch bound to 2-aminopurineX-RAY DIFFRACTION2.467
72EES|1|AGuanine riboswitch A21U, U75A mutant bound to hypoxanthineX-RAY DIFFRACTION1.7567
82EET|1|AGuanine Riboswitch A21G, U75C mutant bound to hypoxanthineX-RAY DIFFRACTION1.9567
94FEJ|1|BCrystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-RAY DIFFRACTION1.567
102XNZ|1|Axpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screeningX-RAY DIFFRACTION1.5965
112G9C|1|AModified pyrimidines Specifically bind the purine riboswitchX-RAY DIFFRACTION1.767
123GER|1|AGuanine riboswitch bound to 6-chloroguanineX-RAY DIFFRACTION1.767
133FO4|1|ACrystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanineX-RAY DIFFRACTION1.963
144FE5|1|BCrystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-RAY DIFFRACTION1.3267
152XO1|1|Axpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenineX-RAY DIFFRACTION1.665
163FO6|1|ACrystal structure of guanine riboswitch bound to 6-O-methylguanineX-RAY DIFFRACTION1.967
173GOG|1|AGuanine riboswitch A21G,U75C mutant bound to 6-chloroguanineX-RAY DIFFRACTION2.165
186UC9|1|BGuanine riboswitch bound to O6-cyclohexylmethyl guanineX-RAY DIFFRACTION1.9467
196UBU|1|B1.60 A resolution structure of the guanine riboswitch bound to guanineX-RAY DIFFRACTION1.667
202EEW|1|AGuanine Riboswitch U47C mutant bound to hypoxanthineX-RAY DIFFRACTION2.2567
216UC8|1|BGuanine riboswitch bound to 8-aminoguanineX-RAY DIFFRACTION1.967
222B57|1|AGuanine Riboswitch C74U mutant bound to 2,6-diaminopurineX-RAY DIFFRACTION2.1565
233GOT|1|AGuanine riboswitch C74U mutant bound to 2-fluoroadenine.X-RAY DIFFRACTION1.9567
242XNW|1|AXPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENINGX-RAY DIFFRACTION1.565
251U8D|1|AGuanine riboswitch bound to hypoxanthineX-RAY DIFFRACTION1.9567
263GAO|1|ACrystal structure of the guanine riboswitch bound to xanthine.X-RAY DIFFRACTION1.967
272EEU|1|AGuanine riboswitch U22A, A52U mutant bound to hypoxanthineX-RAY DIFFRACTION1.9567
283GES|1|ACrystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanineX-RAY DIFFRACTION2.1567
292EEV|1|AGuanine riboswitch U22C, A52G mutant bound to hypoxanthineX-RAY DIFFRACTION1.9567
303DS7|1|AStructure of an RNA-2'-deoxyguanosine complexX-RAY DIFFRACTION1.8567
313DS7|1|BStructure of an RNA-2'-deoxyguanosine complexX-RAY DIFFRACTION1.8567
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