#IFECompound(s)RNA source organismTitleMethodResolutionDate
16N6I|1|C (rep)RNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432019-06-12
26N6I|1|DRNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432019-06-12
36N6A|1|DRNA (5'-R(P*GP*G)-3')Pseudomonas aeruginosaVibrio cholerae Oligoribonuclease bound to pGGX-RAY DIFFRACTION1.52019-06-12
43U2E|1|DRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322011-10-12
53U2E|1|CRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322011-10-12
65UEF|1|CRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12017-07-05
75UEF|1|DRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12017-07-05
84AFY|1|D5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012013-01-09
94AFY|1|C5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012013-01-09
106S0M|1|CRNA (5'-R(P*G)-3')Escherichia coliStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-RAY DIFFRACTION22019-08-28

Release history

Release3.893.903.913.923.933.94
Date2019-08-282019-09-042019-09-112019-09-192019-09-252019-10-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_89612.6NR_2.5_89612.53.89(9) 6N6I|1|D, 6N6I|1|C, 6N6A|1|D, 5UEF|1|D, 5UEF|1|C, 4AFY|1|D, 4AFY|1|C, 3U2E|1|D, 3U2E|1|C(1) 6S0M|1|C(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_89612.6NR_2.5_89612.73.95(10) 4AFY|1|D, 6N6I|1|C, 4AFY|1|C, 6N6A|1|D, 3U2E|1|D, 5UEF|1|D, 6S0M|1|C, 3U2E|1|C, 5UEF|1|C, 6N6I|1|D(0) (4) 6IJ2|1|G, 6IJ2|1|F, 6IJ2|1|E, 6IJ2|1|H

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16N6A|1|DVibrio cholerae Oligoribonuclease bound to pGGX-RAY DIFFRACTION1.52
26N6I|1|CHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
35UEF|1|DRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
45UEF|1|CRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
56S0M|1|CStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-RAY DIFFRACTION21
66N6I|1|DHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
73U2E|1|DEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
84AFY|1|DCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
94AFY|1|CCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
103U2E|1|CEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322