Equivalence class NR_2.5_90506.58 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7ZW0|1|LA+ 7ZW0|1|LD (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA (RDN25-1), 5.8S ribosomal RNA (RDN58-1) | Saccharomyces cerevisiae W303 | Eukarya | RF02543 + RF00002 | FAP-80S Complex - Rotated state | Electron microscopy | 2.4 | 2022-10-05 |
| 2 | 8AGX|1|f+ 8AGX|1|i | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | Electron microscopy | 2.4 | 2023-03-08 |
| 3 | 7TOP|1|A25S+ 7TOP|1|A58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | Electron microscopy | 2.4 | 2022-05-25 |
| 4 | 8AAF|1|f+ 8AAF|1|i | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast RQC complex in state G | Electron microscopy | 2.5 | 2023-03-08 |
| 5 | 7ZUX|1|5+ 7ZUX|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Collided ribosome in a disome unit from S. cerevisiae | Electron microscopy | 2.5 | 2023-02-22 |
Release history
| Release | 3.273 |
|---|---|
| Date | 2023-03-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_90506.58 | NR_2.5_90506.57 | 3.273 | (3) 7ZW0|1|LA+7ZW0|1|LD, 7ZUX|1|5+7ZUX|1|3, 7TOP|1|A25S+7TOP|1|A58S | (2) 8AGX|1|f+8AGX|1|i, 8AAF|1|f+8AAF|1|i | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_90506.58 | NR_2.5_90506.59 | 3.274 | (5) 7ZUX|1|5+7ZUX|1|3, 8AGX|1|f+8AGX|1|i, 7TOP|1|A25S+7TOP|1|A58S, 8AAF|1|f+8AAF|1|i, 7ZW0|1|LA+7ZW0|1|LD | (0) | (4) 7UOO|1|1+7UOO|1|2, 7V08|1|1+7V08|1|2, 7UQZ|1|1+7UQZ|1|2, 7UQB|1|1+7UQB|1|2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8AGX|1|f+8AGX|1|i | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | ELECTRON MICROSCOPY | 2.4 | 3216 |
| 2 | 8AAF|1|f+8AAF|1|i | Yeast RQC complex in state G | ELECTRON MICROSCOPY | 2.5 | 3217 |
| 3 | 7ZUX|1|5+7ZUX|1|3 | Collided ribosome in a disome unit from S. cerevisiae | ELECTRON MICROSCOPY | 2.5 | 3163 |
| 4 | 7ZW0|1|LA+7ZW0|1|LD | FAP-80S Complex - Rotated state | ELECTRON MICROSCOPY | 2.4 | 3217 |
| 5 | 7TOP|1|A25S+7TOP|1|A58S | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | ELECTRON MICROSCOPY | 2.4 | 3194 |