BGSU RNA Site //

Equivalence class NR_2.5_94729.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
11JBR|1|D (rep)31-mer SRD RNA analogCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-ray diffraction2.152001-10-26
2480D|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.51999-10-08
34Y27|1|A27-mer 23S Sarcin-Ricil LoopEscherichia coliBacteriaE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-ray diffraction12015-11-18
44NLF|1|A23S ribosomal RNA Sarcin Ricin Loop2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-ray diffraction12014-11-19
51JBS|1|C29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-ray diffraction1.972001-10-26
61JBS|1|D29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-ray diffraction1.972001-10-26
73DW4|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-ray diffraction0.972009-03-24
81MSY|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNAGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-ray diffraction1.412003-02-25
93DW6|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-ray diffraction12009-03-24
105D99|1|ARNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNAEnterobacteria phage L1Viruses3DW4 redetermined by direct methods starting from random phase anglesX-ray diffraction0.972016-04-13
113DVZ|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-ray diffraction12009-03-24
123S7C|1|AEcoli 23 S rRNA Sarcin Ricin loopCrystal structure of a 2'-azido-uridine-modified RNAX-ray diffraction1.12012-04-11
134NXH|1|A23S ribosomal RNA Sarcin Ricin LoopEscherichia coliBacteria2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-ray diffraction1.162014-12-10
143S8U|1|AEcoli 23 S rRNA Sarcin Ricin loopEscherichia coliBacteriaCrystal structure of a 2-azido-adenine-modified RNAX-ray diffraction1.22012-04-11
151Q9A|1|ASarcin/ricin 23S rRNACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-ray diffraction1.042003-11-25
16483D|1|ASARCIN/RICIN RRNA DOMAINCRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.111999-10-08
173DW5|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-ray diffraction0.962009-03-24
184NMG|1|A23S ribosomal RNA Sarcin Ricin Loop2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-ray diffraction1.012014-11-19
193DW7|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-ray diffraction12009-03-24

Release history

Release2.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.138
Date2016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_94729.1NR_2.5_02969.12.93(1) 1JBR|1|D(18) 1JBS|1|C, 5D99|1|A, 4Y27|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 1JBS|1|D(0)
NR_2.5_94729.1NR_2.5_05984.12.93(2) 1JBS|1|C, 1JBS|1|D(17) 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 5D99|1|A, 1MSY|1|A, 4Y27|1|A, 1JBR|1|D(0)
NR_2.5_94729.1NR_2.5_73827.42.93(16) 3DW5|1|A, 4Y27|1|A, 3DW4|1|A, 4NXH|1|A, 3DVZ|1|A, 4NMG|1|A, 1Q9A|1|A, 4NLF|1|A, 1MSY|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 5D99|1|A(3) 1JBR|1|D, 1JBS|1|D, 1JBS|1|C(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_94729.1NR_2.5_94729.22.139(19) 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 1JBS|1|D, 5D99|1|A, 1JBS|1|C, 4Y27|1|A, 1JBR|1|D, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A(0) (1) 5NQI|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION128
2480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
34Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION125
43DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9726
55D99|1|A3DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.9730
63DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION128
73S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.132
84NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1632
93DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION137
104NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0136
113DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9632
123DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION135
133S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.234
141Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0438
15483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1139
161MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4131
171JBR|1|DCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.1531
181JBS|1|CCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
191JBS|1|DCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
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