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Equivalence class NR_2.5_97519.18 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14Y4O|1|1A (rep)Large subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
24Y4P|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
34W2F|1|BALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
44Y4O|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
54W2F|1|DALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
64Y4P|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18

Release history

Release2.772.782.792.802.812.822.832.842.852.862.872.882.892.902.91
Date2016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_97519.18NR_all_97519.172.77(6) 4W2F|1|BA, 4Y4O|1|2A, 4Y4P|1|1A, 4W2F|1|DA, 4Y4P|1|2A, 4Y4O|1|1A(0) (267) 4V8I|1|BA, 4WZO|1|14, 4TUC|1|RA, 5EL6|1|1H, 4V5J|1|DA, 4V97|1|DA, 5E81|1|1H, 4W2I|1|BA, 5J4D|1|B, 4V67|1|BA, 4W29|1|DA, 4WSM|1|1H, 4V7Z|1|BA, 4V8Q|1|AA, 4V4I|1|w, 4V5P|1|DA, 4V9N|1|BA, 5EL7|1|14, 4V5K|1|BA, 1VY5|1|DA, 4V7M|1|DA, 4W2I|1|DA, 5J4D|1|GB, 4TUB|1|RA, 4V87|1|DA, 4WT1|1|14, 4LEL|1|YA, 5E7K|1|1H, 4V8U|1|BA, 4Z3S|1|1A, 4V5Q|1|BA, 5EL7|1|1H, 1VY6|1|BA, 4V7P|1|BA, 4W4G|1|RA, 1VVJ|1|RA, 4WZD|1|1H, 4TUB|1|YA, 4V8A|1|AA, 4WT1|1|1H, 4V97|1|BA, 5E81|1|14, 4V4Z|1|BA, 4V8U|1|DA, 4W29|1|BA, 5HAU|1|1A, 4V5Q|1|DA, 4V7Y|1|DA, 1VY6|1|DA, 4V42|1|BA, 4V5F|1|BA, 4V8X|1|DA, 5DOY|1|1A, 4W2E|1|A, 5IMR|1|D, 4V5R|1|DA, 4V9R|1|BA, 4WRO|1|14, 4V7W|1|DA, 4V8J|1|BA, 4TUD|1|RA, 4V5K|1|DA, 4V9K|1|DA, 5EL4|1|1H, 4V5F|1|DA, 4V7K|1|AA, 4W2G|1|BA, 5J4B|1|1A, 4P6F|1|YA, 4V83|1|BA, 4WRO|1|1H, 4L47|1|RA, 5DOX|1|1A, 4V8J|1|DA, 4XEJ|1|B23S, 4V5L|1|BA, 5EL5|1|14, 4WQU|1|AA, 1VVJ|1|YA, 4V7K|1|BA, 4W2G|1|DA, 4WT8|1|C1, 4P70|1|RA, 4V83|1|DA, 4WSD|1|14, 4V8X|1|BA, 5DOX|1|2A, 4V4R|1|BA, 4V8N|1|BA, 4V9Q|1|CA, 5F8K|1|2A, 4V5M|1|BA, 4V7W|1|BA, 1VY

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14Y4P|1|1ACrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.52860
24W2F|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42871
34W2F|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42800
44Y4P|1|2ACrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.52789
54Y4O|1|2ACrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.32856
64Y4O|1|1ACrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.32861
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