NR_2.5_97519.60

Members (22)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	7RQB\|1\|1A (rep)	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-ray diffraction	2.45	2022-01-26
2	7RQB\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-ray diffraction	2.45	2022-01-26
3	4Y4O\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
4	4Y4O\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
5	7RQE\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-ray diffraction	2.4	2022-01-26
6	7RQE\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-ray diffraction	2.4	2022-01-26
7	7RQ8\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2021-10-13
8	7RQ8\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2021-10-13
9	7RQC\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-ray diffraction	2.5	2022-01-26
10	7RQC\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-ray diffraction	2.5	2022-01-26
11	6XHW\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2020-12-23
12	7RQD\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-ray diffraction	2.5	2022-01-26
13	6XHV\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	2020-12-23
14	7RQD\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-ray diffraction	2.5	2022-01-26
15	6XHW\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2020-12-23
16	6XHV\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	2020-12-23
17	7RQA\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-ray diffraction	2.4	2022-01-26
18	4W2F\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
19	4W2F\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
20	7RQA\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-ray diffraction	2.4	2022-01-26
21	4Y4P\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
22	4Y4P\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18

Release history

Release	3.239	3.240	3.241	3.242	3.243	3.244	3.245	3.246	3.247	3.248	3.249	3.250	3.251	3.252
Date	2022-07-13	2022-07-20	2022-07-27	2022-08-03	2022-08-10	2022-08-17	2022-08-24	2022-08-31	2022-09-07	2022-09-14	2022-09-21	2022-09-28	2022-10-05	2022-10-12

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_2.5_97519.60	NR_2.5_97519.59	3.239	(22) 4W2F\|1\|BA, 7RQA\|1\|1A, 7RQA\|1\|2A, 7RQB\|1\|1A, 7RQB\|1\|2A, 7RQC\|1\|1A, 7RQC\|1\|2A, 7RQD\|1\|1A, 7RQD\|1\|2A, 7RQE\|1\|1A, 7RQ8\|1\|2A, 7RQ8\|1\|1A, 4W2F\|1\|DA, 4Y4O\|1\|1A, 4Y4O\|1\|2A, 4Y4P\|1\|1A, 4Y4P\|1\|2A, 6XHV\|1\|1A, 6XHV\|1\|2A, 6XHW\|1\|1A, 6XHW\|1\|2A, 7RQE\|1\|2A	(0)	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_2.5_97519.60	NR_2.5_97519.61	3.253	(22) 7RQB\|1\|1A, 4W2F\|1\|DA, 7RQC\|1\|2A, 4Y4P\|1\|1A, 7RQE\|1\|1A, 6XHV\|1\|1A, 6XHW\|1\|2A, 7RQA\|1\|1A, 4Y4O\|1\|2A, 7RQD\|1\|2A, 7RQ8\|1\|2A, 4W2F\|1\|BA, 7RQC\|1\|1A, 6XHW\|1\|1A, 7RQA\|1\|2A, 4Y4P\|1\|2A, 7RQE\|1\|2A, 4Y4O\|1\|1A, 7RQD\|1\|1A, 7RQ8\|1\|1A, 7RQB\|1\|2A, 6XHV\|1\|2A	(0)	(6) 8CVL\|1\|1A, 8CVK\|1\|1A, 8CVJ\|1\|1A, 8CVK\|1\|2A, 8CVJ\|1\|2A, 8CVL\|1\|2A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	7RQC\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-RAY DIFFRACTION	2.5	2861
2	7RQD\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-RAY DIFFRACTION	2.5	2861
3	7RQE\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-RAY DIFFRACTION	2.4	2861
4	7RQB\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-RAY DIFFRACTION	2.45	2861
5	7RQA\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-RAY DIFFRACTION	2.4	2861
6	4Y4O\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	2861
7	4Y4O\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	2856
8	7RQA\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-RAY DIFFRACTION	2.4	2856
9	7RQB\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-RAY DIFFRACTION	2.45	2856
10	7RQD\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-RAY DIFFRACTION	2.5	2856
11	7RQE\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-RAY DIFFRACTION	2.4	2856
12	7RQC\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-RAY DIFFRACTION	2.5	2856
13	6XHW\|1\|2A	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	2789
14	7RQ8\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	2789
15	4Y4P\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	2789
16	4W2F\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2800
17	4W2F\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2871
18	4Y4P\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	2860
19	7RQ8\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	2860
20	6XHW\|1\|1A	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	2860
21	6XHV\|1\|1A	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	2859
22	6XHV\|1\|2A	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	2788

Equivalence class NR_2.5_97519.60 Obsolete

Release history

Parents

Children