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Equivalence class NR_2.5_97519.63 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17RQB|1|1A (rep)Large subunit ribosomal RNA23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolutionX-ray diffraction2.4528722022-01-26
27RQB|1|2ALarge subunit ribosomal RNA23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolutionX-ray diffraction2.4528672022-01-26
34Y4O|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.328672015-03-18
44Y4O|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.328722015-03-18
57RQE|1|1ALarge subunit ribosomal RNA23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolutionX-ray diffraction2.428722022-01-26
67RQE|1|2ALarge subunit ribosomal RNA23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolutionX-ray diffraction2.428672022-01-26
77RQ8|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolutionX-ray diffraction2.528712021-10-13
87RQ8|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolutionX-ray diffraction2.528002021-10-13
97RQC|1|1ALarge subunit ribosomal RNA23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolutionX-ray diffraction2.528722022-01-26
107RQC|1|2ALarge subunit ribosomal RNA23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolutionX-ray diffraction2.528672022-01-26
118CVK|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolutionX-ray diffraction2.528712022-10-19
126XHW|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-ray diffraction2.528712020-12-23
137RQD|1|1ALarge subunit ribosomal RNA23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolutionX-ray diffraction2.528722022-01-26
146XHV|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-ray diffraction2.428712020-12-23
157RQD|1|2ALarge subunit ribosomal RNA23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolutionX-ray diffraction2.528672022-01-26
166XHW|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-ray diffraction2.528002020-12-23
178CVJ|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolutionX-ray diffraction2.428712022-10-19
188CVK|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolutionX-ray diffraction2.528002022-10-19
196XHV|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-ray diffraction2.428002020-12-23
207RQA|1|1ALarge subunit ribosomal RNA23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolutionX-ray diffraction2.428722022-01-26
214W2F|1|DALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.428002014-10-15
224W2F|1|BALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.428712014-10-15
237RQA|1|2ALarge subunit ribosomal RNA23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolutionX-ray diffraction2.428672022-01-26
244Y4P|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.528712015-03-18
254Y4P|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.528002015-03-18
268CVL|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolutionX-ray diffraction2.328712022-10-19
278CVJ|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolutionX-ray diffraction2.428002022-10-19
288CVL|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilus HB8BacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolutionX-ray diffraction2.328002022-10-19

Release history

Release3.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.290
Date2023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_97519.63NR_2.5_97519.623.276(28) 4W2F|1|BA, 4W2F|1|DA, 4Y4O|1|1A, 4Y4O|1|2A, 4Y4P|1|1A, 4Y4P|1|2A, 6XHV|1|1A, 6XHV|1|2A, 6XHW|1|1A, 6XHW|1|2A, 7RQ8|1|1A, 7RQ8|1|2A, 7RQA|1|1A, 7RQA|1|2A, 7RQB|1|1A, 7RQB|1|2A, 7RQC|1|1A, 7RQC|1|2A, 7RQD|1|1A, 7RQD|1|2A, 7RQE|1|1A, 7RQE|1|2A, 8CVJ|1|1A, 8CVJ|1|2A, 8CVK|1|1A, 8CVK|1|2A, 8CVL|1|1A, 8CVL|1|2A(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_97519.63NR_2.5_97519.643.291(28) 4W2F|1|BA, 4W2F|1|DA, 4Y4O|1|1A, 4Y4O|1|2A, 4Y4P|1|1A, 4Y4P|1|2A, 6XHV|1|1A, 6XHV|1|2A, 6XHW|1|1A, 6XHW|1|2A, 7RQ8|1|1A, 7RQ8|1|2A, 7RQA|1|1A, 7RQA|1|2A, 7RQB|1|1A, 7RQB|1|2A, 7RQC|1|1A, 7RQC|1|2A, 7RQD|1|1A, 7RQD|1|2A, 7RQE|1|1A, 7RQE|1|2A, 8CVJ|1|1A, 8CVJ|1|2A, 8CVK|1|1A, 8CVK|1|2A, 8CVL|1|1A, 8CVL|1|2A(0) (4) 8FC1|1|1A, 8FC1|1|2A, 8FC2|1|1A, 8FC2|1|2A

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16XHV|1|2ACrystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-RAY DIFFRACTION2.42800
26XHV|1|1ACrystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-RAY DIFFRACTION2.42871
38CVL|1|1ACrystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolutionX-RAY DIFFRACTION2.32871
48CVK|1|1ACrystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolutionX-RAY DIFFRACTION2.52871
58CVJ|1|1ACrystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolutionX-RAY DIFFRACTION2.42871
66XHW|1|1ACrystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.52871
77RQ8|1|1ACrystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.52871
84Y4P|1|1ACrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.52871
94W2F|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42871
104W2F|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42800
114Y4P|1|2ACrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.52800
128CVL|1|2ACrystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolutionX-RAY DIFFRACTION2.32800
137RQ8|1|2ACrystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.52800
146XHW|1|2ACrystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.52800
158CVJ|1|2ACrystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolutionX-RAY DIFFRACTION2.42800
168CVK|1|2ACrystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolutionX-RAY DIFFRACTION2.52800
177RQC|1|2ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolutionX-RAY DIFFRACTION2.52867
187RQD|1|2ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolutionX-RAY DIFFRACTION2.52867
197RQE|1|2ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolutionX-RAY DIFFRACTION2.42867
207RQB|1|2ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolutionX-RAY DIFFRACTION2.452867
217RQA|1|2ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolutionX-RAY DIFFRACTION2.42867
224Y4O|1|2ACrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.32867
234Y4O|1|1ACrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.32872
247RQA|1|1ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolutionX-RAY DIFFRACTION2.42872
257RQB|1|1ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolutionX-RAY DIFFRACTION2.452872
267RQE|1|1ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolutionX-RAY DIFFRACTION2.42872
277RQD|1|1ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolutionX-RAY DIFFRACTION2.52872
287RQC|1|1ACrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolutionX-RAY DIFFRACTION2.52872

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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