NR_2.5_97519.8

Members (6)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4Y4O\|1\|1A (rep)	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
2	4Y4P\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
3	4W2F\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
4	4Y4O\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
5	4W2F\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
6	4Y4P\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18

Release history

Release	2.26
Date	2015-06-05

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_2.5_97519.8	NR_all_97519.7	2.26	(6) 4Y4P\|1\|1A, 4Y4P\|1\|2A, 4W2F\|1\|BA, 4W2F\|1\|DA, 4Y4O\|1\|1A, 4Y4O\|1\|2A	(0)	(193) 4TUC\|1\|RA, 4V8U\|1\|DA, 4V8G\|1\|BA, 4V4P\|1\|AA, 4TUA\|1\|RA, 4V8N\|1\|DA, 4TUE\|1\|YA, 4V95\|1\|DA, 4V4Y\|1\|BA, 4V9I\|1\|DA, 4V5D\|1\|DA, 4V9N\|1\|BA, 4V5K\|1\|BA, 4W29\|1\|DA, 4V9L\|1\|BA, 4V5R\|1\|BA, 4V5G\|1\|BA, 4V9R\|1\|DA, 4V5P\|1\|BA, 4W2H\|1\|DA, 4V63\|1\|DA, 4WQY\|1\|AA, 4V6G\|1\|DA, 4V7P\|1\|BA, 1VVJ\|1\|RA, 4XEJ\|1\|B23S, 4V7Z\|1\|DA, 4V7L\|1\|BA, 1VY7\|1\|DA, 4V7X\|1\|DA, 1VY5\|1\|DA, 4V87\|1\|AA, 4LEL\|1\|RA, 4V8D\|1\|DA, 4LT8\|1\|YA, 4V8I\|1\|BA, 4TUE\|1\|RA, 4V9A\|1\|DA, 4V5A\|1\|BA, 4V9K\|1\|DA, 4V5F\|1\|DA, 4V9R\|1\|BA, 4V5N\|1\|BA, 4WPO\|1\|CA, 4V6A\|1\|BA, 4XEJ\|1\|A23S, 4V7K\|1\|BA, 4V7X\|1\|BA, 1VY5\|1\|BA, 4V8B\|1\|BA, 4LNT\|1\|RA, 4V8F\|1\|DA, 4P70\|1\|YA, 4V8N\|1\|BA, 4V95\|1\|BA, 4V4X\|1\|BA, 4V9I\|1\|BA, 4V5D\|1\|BA, 4V9M\|1\|DA, 4V5J\|1\|DA, 4W2H\|1\|BA, 4V63\|1\|BA, 4WQU\|1\|CA, 4V6G\|1\|BA, 4V7M\|1\|DA, 4ZER\|1\|2A, 4V84\|1\|DA, 4L71\|1\|YA, 4V8D\|1\|BA, 4LT8\|1\|RA, 4V8H\|1\|DA, 4TUB\|1\|YA, 4V8U\|1\|BA, 4V4J\|1\|w, 4V9A\|1\|BA, 4V51\|1\|DA, 4V9K\|1\|BA, 4V5F\|1\|BA, 4W29\|1\|BA, 4V5Q\|1\|DA, 4WPO\|1\|AA, 4V68\|1\|BA, 4WT8\|1\|D1, 4V7K\|1\|AA, 4V7Z\|1\|BA, 1VY7\|1\|BA, 4V8A\|1\|BA, 4LFZ\|1\|YA, 4V8F\|1\|AA, 4P70\|1\|RA, 4V8J\|1\|DA, 4TUD\|1\|YA, 4V90\|1\|BA

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4Y4P\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	2860
2	4W2F\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2871
3	4W2F\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2800
4	4Y4P\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	2789
5	4Y4O\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	2856
6	4Y4O\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	2861

Equivalence class NR_2.5_97519.8 Obsolete

Release history

Parents

Children