Equivalence class NR_20.0_01949.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5UED|1|A+ 5UED|1|B (rep) | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')G | X-ray diffraction | 1.5 | 2017-07-05 | |||
| 2 | 6C8J|1|A+ 6C8J|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-activated 2-AIpG monomer complex, 15 min soaking | X-ray diffraction | 1.5 | 2018-05-30 | |||
| 3 | 6C8D|1|A+ 6C8D|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-dGMP complex with Mg ion | X-ray diffraction | 1.92 | 2018-05-30 | |||
| 4 | 6C8I|1|A+ 6C8I|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-activated 2-AIpG monomer complex, 5 min soaking | X-ray diffraction | 1.77 | 2018-05-30 | |||
| 5 | 5UEE|1|A+ 5UEE|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.9 | 2017-07-05 | |||
| 6 | 6C8L|1|A+ 6C8L|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-activated 2-AIpG monomer complex, 1h soaking | X-ray diffraction | 2.25 | 2018-05-30 | |||
| 7 | 6C8E|1|A+ 6C8E|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-imidazolium-bridged intermediate complex, 4h soaking | X-ray diffraction | 1.8 | 2018-05-30 | |||
| 8 | 5UEF|1|A+ 5UEF|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligand | X-ray diffraction | 2.1 | 2017-07-05 | |||
| 9 | 6C8K|1|A+ 6C8K|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-activated 2-AIpG monomer complex, 30 min soaking | X-ray diffraction | 2.26 | 2018-05-30 | |||
| 10 | 6CAB|1|A+ 6CAB|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-dGMP complex with Sr ion | X-ray diffraction | 2.5 | 2018-05-30 | |||
| 11 | 6OWL|1|A | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*R)-3') | synthetic construct | RNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMP | X-ray diffraction | 2 | 2020-02-26 | |||
| 12 | 5UEG|1|A+ 5UEG|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand | X-ray diffraction | 2.6 | 2017-07-05 | |||
| 13 | 5UEG|1|C+ 5UEG|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand | X-ray diffraction | 2.6 | 2017-07-05 |
Release history
| Release | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_01949.2 | NR_20.0_01949.1 | 3.115 | (12) 6CAB|1|A+6CAB|1|B, 6C8L|1|A+6C8L|1|B, 6C8K|1|A+6C8K|1|B, 6C8J|1|A+6C8J|1|B, 6C8I|1|A+6C8I|1|B, 6C8E|1|A+6C8E|1|B, 6C8D|1|A+6C8D|1|B, 5UEG|1|C+5UEG|1|D, 5UEG|1|A+5UEG|1|B, 5UEF|1|A+5UEF|1|B, 5UEE|1|A+5UEE|1|B, 5UED|1|A+5UED|1|B | (1) 6OWL|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_01949.2 | NR_20.0_01949.3 | 3.156 | (13) 6OWL|1|A, 6CAB|1|A+6CAB|1|B, 6C8L|1|A+6C8L|1|B, 6C8K|1|A+6C8K|1|B, 6C8J|1|A+6C8J|1|B, 6C8I|1|A+6C8I|1|B, 6C8E|1|A+6C8E|1|B, 6C8D|1|A+6C8D|1|B, 5UEG|1|C+5UEG|1|D, 5UEG|1|A+5UEG|1|B, 5UEF|1|A+5UEF|1|B, 5UEE|1|A+5UEE|1|B, 5UED|1|A+5UED|1|B | (0) | (1) 6U8U|1|A+6U8U|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6CAB|1|A+6CAB|1|B | RNA-dGMP complex with Sr ion | X-RAY DIFFRACTION | 2.5 | 12 |
| 2 | 6C8L|1|A+6C8L|1|B | RNA-activated 2-AIpG monomer complex, 1h soaking | X-RAY DIFFRACTION | 2.25 | 10 |
| 3 | 6C8K|1|A+6C8K|1|B | RNA-activated 2-AIpG monomer complex, 30 min soaking | X-RAY DIFFRACTION | 2.26 | 10 |
| 4 | 5UEE|1|A+5UEE|1|B | RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.9 | 11 |
| 5 | 6C8E|1|A+6C8E|1|B | RNA-imidazolium-bridged intermediate complex, 4h soaking | X-RAY DIFFRACTION | 1.8 | 10 |
| 6 | 6C8J|1|A+6C8J|1|B | RNA-activated 2-AIpG monomer complex, 15 min soaking | X-RAY DIFFRACTION | 1.5 | 10 |
| 7 | 6C8D|1|A+6C8D|1|B | RNA-dGMP complex with Mg ion | X-RAY DIFFRACTION | 1.92 | 10 |
| 8 | 5UEG|1|C+5UEG|1|D | RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand | X-RAY DIFFRACTION | 2.6 | 11 |
| 9 | 5UEG|1|A+5UEG|1|B | RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand | X-RAY DIFFRACTION | 2.6 | 11 |
| 10 | 5UEF|1|A+5UEF|1|B | RNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligand | X-RAY DIFFRACTION | 2.1 | 11 |
| 11 | 5UED|1|A+5UED|1|B | RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')G | X-RAY DIFFRACTION | 1.5 | 11 |
| 12 | 6C8I|1|A+6C8I|1|B | RNA-activated 2-AIpG monomer complex, 5 min soaking | X-RAY DIFFRACTION | 1.77 | 10 |
| 13 | 6OWL|1|A | RNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMP | X-RAY DIFFRACTION | 2 | 9 |