Equivalence class NR_20.0_02127.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7OM7|1|H+ 7OM7|1|G (rep) | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-ray diffraction | 2.4 | 2021-07-28 | |||
| 2 | 7OM6|1|E+ 7OM6|1|C | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA | X-ray diffraction | 2.18 | 2021-07-28 | |||
| 3 | 7OM7|1|F+ 7OM7|1|E | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-ray diffraction | 2.4 | 2021-07-28 | |||
| 4 | 7OM7|1|I+ 7OM7|1|J | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-ray diffraction | 2.4 | 2021-07-28 | |||
| 5 | 7OM6|1|F+ 7OM6|1|D | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA | X-ray diffraction | 2.18 | 2021-07-28 | |||
| 6 | 4WTA|1|T+ 4WTA|1|P | RNA PRIMER TEMPLATE CAAAAUUU | synthetic construct | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH UDP, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-ray diffraction | 2.8 | 2015-02-11 | |||
| 7 | 7OM7|1|K+ 7OM7|1|L | RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-ray diffraction | 2.4 | 2021-07-28 | |||
| 8 | 7OMA|1|F+ 7OMA|1|E | RNA (5'-R(P*CP*AP*AP*AP*AP*UP*UP*U)-3'), RNA (5'-R(P*AP*AP*AP*UP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain elongation complex | X-ray diffraction | 3.1 | 2021-07-28 | |||
| 9 | 4WTF|1|T+ 4WTF|1|P | RNA PRIMER TEMPLATE CAAAAUUU | synthetic construct | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH GS-639475, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-ray diffraction | 2.65 | 2015-02-11 | |||
| 10 | 4WTG|1|T+ 4WTG|1|P | RNA PRIMER TEMPLATE CAAAAUUU | synthetic construct | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH SOFOSBUVIR DIPHOSPHATE GS-607596, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-ray diffraction | 2.9 | 2015-02-11 | |||
| 11 | 7OMA|1|J+ 7OMA|1|I | RNA (5'-R(P*CP*AP*AP*AP*AP*UP*UP*U)-3'), RNA (5'-R(P*AP*AP*AP*UP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain elongation complex | X-ray diffraction | 3.1 | 2021-07-28 | |||
| 12 | 7OMA|1|H+ 7OMA|1|G | RNA (5'-R(P*CP*AP*AP*AP*AP*UP*UP*U)-3'), RNA (5'-R(P*AP*AP*AP*UP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain elongation complex | X-ray diffraction | 3.1 | 2021-07-28 | |||
| 13 | 7OMA|1|K+ 7OMA|1|L | RNA (5'-R(P*CP*AP*AP*AP*AP*UP*UP*U)-3'), RNA (5'-R(P*AP*AP*AP*UP*UP*UP*U)-3') | synthetic construct | Thosea asigna virus RdRP domain elongation complex | X-ray diffraction | 3.1 | 2021-07-28 |
Release history
| Release | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
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| Date | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_02127.1 | NR_20.0_50058.1 | 3.189 | (3) 4WTA|1|T+4WTA|1|P, 4WTG|1|T+4WTG|1|P, 4WTF|1|T+4WTF|1|P | (10) 7OMA|1|F+7OMA|1|E, 7OM7|1|K+7OM7|1|L, 7OM7|1|I+7OM7|1|J, 7OM7|1|H+7OM7|1|G, 7OM7|1|F+7OM7|1|E, 7OM6|1|F+7OM6|1|D, 7OM6|1|E+7OM6|1|C, 7OMA|1|K+7OMA|1|L, 7OMA|1|J+7OMA|1|I, 7OMA|1|H+7OMA|1|G | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7OMA|1|K+7OMA|1|L | Thosea asigna virus RdRP domain elongation complex | X-RAY DIFFRACTION | 3.1 | 8 |
| 2 | 7OMA|1|J+7OMA|1|I | Thosea asigna virus RdRP domain elongation complex | X-RAY DIFFRACTION | 3.1 | 8 |
| 3 | 7OMA|1|H+7OMA|1|G | Thosea asigna virus RdRP domain elongation complex | X-RAY DIFFRACTION | 3.1 | 8 |
| 4 | 7OM7|1|F+7OM7|1|E | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-RAY DIFFRACTION | 2.4 | 8 |
| 5 | 7OMA|1|F+7OMA|1|E | Thosea asigna virus RdRP domain elongation complex | X-RAY DIFFRACTION | 3.1 | 8 |
| 6 | 7OM6|1|F+7OM6|1|D | Thosea asigna virus RdRP domain in complex with RNA | X-RAY DIFFRACTION | 2.18 | 8 |
| 7 | 7OM7|1|K+7OM7|1|L | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-RAY DIFFRACTION | 2.4 | 8 |
| 8 | 7OM6|1|E+7OM6|1|C | Thosea asigna virus RdRP domain in complex with RNA | X-RAY DIFFRACTION | 2.18 | 8 |
| 9 | 4WTG|1|T+4WTG|1|P | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH SOFOSBUVIR DIPHOSPHATE GS-607596, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-RAY DIFFRACTION | 2.9 | 8 |
| 10 | 4WTF|1|T+4WTF|1|P | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH GS-639475, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-RAY DIFFRACTION | 2.65 | 8 |
| 11 | 4WTA|1|T+4WTA|1|P | CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH UDP, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU | X-RAY DIFFRACTION | 2.8 | 8 |
| 12 | 7OM7|1|I+7OM7|1|J | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-RAY DIFFRACTION | 2.4 | 8 |
| 13 | 7OM7|1|H+7OM7|1|G | Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP | X-RAY DIFFRACTION | 2.4 | 8 |