Equivalence class NR_20.0_03196.7 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4KZY|1|i (rep) | 18S Ribosomal RNA | Oryctolagus cuniculus | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-RAY DIFFRACTION | 7.01 | 2013-07-24 |
| 2 | 3JAG|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 2015-08-12 |
| 3 | 3JAH|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 2015-08-12 |
| 4 | 3JAI|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 2015-08-12 |
| 5 | 5FLX|1|1 | 18S RRNA | Oryctolagus cuniculus | Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 2015-12-23 |
| 6 | 5K0Y|1|A | 18S ribosomal RNA | Oryctolagus cuniculus | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | ELECTRON MICROSCOPY | 5.8 | 2016-07-13 |
| 7 | 4KZZ|1|i | 18S Ribosomal RNA | Oryctolagus cuniculus | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 2013-07-24 |
| 8 | 4KZX|1|i | 18S ribosomal RNA | Oryctolagus cuniculus | Rabbit 40S ribosomal subunit in complex with eIF1. | X-RAY DIFFRACTION | 7.81 | 2013-07-24 |
| 9 | 3JAN|1|S2 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 2015-08-05 |
| 10 | 3JAJ|1|S2 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 2015-08-05 |
| 11 | 4UJC|1|C1 | 18S RIBOSOMAL RNA | Oryctolagus cuniculus | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 2014-07-30 |
| 12 | 4UJD|1|C1 | 18S Ribosomal RNA | Oryctolagus cuniculus | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 2014-07-30 |
| 13 | 4D5L|1|1 | 18S RRNA 2 | Oryctolagus cuniculus | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 2015-02-04 |
| 14 | 4D61|1|1 | 18S RRNA | Oryctolagus cuniculus | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 2015-03-04 |
| 15 | 4UJE|1|B1 | 18S Ribosomal RNA | Oryctolagus cuniculus | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 2014-07-16 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_03196.7 | NR_20.0_21280.1 | 2.104 | (15) 4KZZ|1|i, 4UJD|1|C1, 3JAH|1|9, 5FLX|1|1, 3JAJ|1|S2, 4D5L|1|1, 4KZX|1|i, 4KZY|1|i, 4UJC|1|C1, 3JAG|1|9, 4UJE|1|B1, 3JAI|1|9, 5K0Y|1|A, 3JAN|1|S2, 4D61|1|1 | (0) | (8) 5LZV|1|9, 5LZU|1|9, 5LZT|1|9, 5LZS|1|9, 5LZZ|1|9, 5LZY|1|9, 5LZX|1|9, 5LZW|1|9 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UJD|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 1742 |
| 2 | 4UJC|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 1742 |
| 3 | 4D61|1|1 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 |
| 4 | 4D5L|1|1 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 |
| 5 | 4UJE|1|B1 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 1742 |
| 6 | 3JAI|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 |
| 7 | 3JAG|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 |
| 8 | 3JAH|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 1719 |
| 9 | 3JAJ|1|S2 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 |
| 10 | 3JAN|1|S2 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 |
| 11 | 4KZZ|1|i | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 1797 |
| 12 | 4KZY|1|i | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-RAY DIFFRACTION | 7.01 | 1840 |
| 13 | 4KZX|1|i | Rabbit 40S ribosomal subunit in complex with eIF1. | X-RAY DIFFRACTION | 7.81 | 1797 |
| 14 | 5K0Y|1|A | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | ELECTRON MICROSCOPY | 5.8 | 1776 |
| 15 | 5FLX|1|1 | Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 1708 |