Equivalence class NR_20.0_03510.1 Obsolete
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 4V88|1|A6 (rep) | 18S rRNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
2 | 4U4R|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
3 | 4U50|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
4 | 4U4Q|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
5 | 4U3U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
6 | 4U52|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
7 | 4U4U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
8 | 4V88|1|A2 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
9 | 4V8Z|1|B2 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 6.6 | 2014-07-09 |
10 | 4V8Y|1|B2 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 4.3 | 2014-07-09 |
11 | 4U4R|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
12 | 4U3U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
13 | 4U3N|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
14 | 4U4N|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
15 | 4U55|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
16 | 4U6F|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
17 | 4U4Y|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
18 | 4U53|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 2014-10-22 |
19 | 4U4Q|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
20 | 4U4U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
21 | 4U4Z|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
22 | 4U4N|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
23 | 4U52|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
24 | 4U3M|1|6 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
25 | 4U51|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
26 | 4U3M|1|2 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
27 | 4U55|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
28 | 4U51|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
29 | 4U4Z|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
30 | 4U3N|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
31 | 4U50|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
32 | 4U56|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 2014-10-22 |
33 | 4U4Y|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
34 | 4U53|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 2014-10-22 |
35 | 4U6F|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
36 | 4U56|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 2014-10-22 |
37 | 3J6Y|1|1S | 18S ribosomal RNA | Saccharomyces cerevisiae | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | ELECTRON MICROSCOPY | 6.1 | 2014-06-11 |
38 | 4U4O|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 2014-10-22 |
39 | 3J78|1|1S | 18S ribosomal RNA | Saccharomyces cerevisiae | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | ELECTRON MICROSCOPY | 6.3 | 2014-08-06 |
40 | 3J77|1|1S | 18S ribosomal RNA | Saccharomyces cerevisiae | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | ELECTRON MICROSCOPY | 6.2 | 2014-08-06 |
41 | 3J6X|1|1S | 18S ribosomal RNA | Saccharomyces cerevisiae | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | ELECTRON MICROSCOPY | 6.1 | 2014-06-11 |
42 | 4U4O|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 2014-10-22 |
43 | 4V7R|1|C1 | 18S ribosomal RNA | Saccharomyces cerevisiae | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 2014-07-09 |
44 | 4V7R|1|A1 | 18S ribosomal RNA | Saccharomyces cerevisiae | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 2014-07-09 |
45 | 4V6I|1|CA | 18S rRNA | Saccharomyces cerevisiae | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | ELECTRON MICROSCOPY | 8.8 | 2014-07-09 |
Release history
Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 |
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Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 4U4O|1|6 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1791 |
2 | 4U56|1|6 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1795 |
3 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
4 | 4U50|1|6 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
5 | 4U53|1|6 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1795 |
6 | 4U51|1|6 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
7 | 4U55|1|6 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
8 | 4U4Z|1|6 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
9 | 4U4Y|1|6 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
10 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
11 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 |
12 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 |
13 | 4U6F|1|6 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
14 | 4U3N|1|6 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
15 | 4U4N|1|6 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
16 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
17 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
18 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1770 |
19 | 4V7R|1|C1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 |
20 | 4V7R|1|A1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 |
21 | 4U4Y|1|2 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
22 | 4V8Y|1|B2 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 4.3 | 1768 |
23 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1768 |
24 | 4V8Z|1|B2 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 6.6 | 1768 |
25 | 4U6F|1|2 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 |
26 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 |
27 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 |
28 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
29 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
30 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
31 | 4U4N|1|2 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 |
32 | 4U3N|1|2 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
33 | 4U4Z|1|2 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 |
34 | 4U55|1|2 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
35 | 4U51|1|2 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
36 | 4U53|1|2 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1750 |
37 | 4U50|1|2 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
38 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
39 | 4U56|1|2 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1750 |
40 | 4U4O|1|2 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1750 |
41 | 3J6Y|1|1S | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | ELECTRON MICROSCOPY | 6.1 | 1781 |
42 | 3J6X|1|1S | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | ELECTRON MICROSCOPY | 6.1 | 1781 |
43 | 3J77|1|1S | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | ELECTRON MICROSCOPY | 6.2 | 1781 |
44 | 3J78|1|1S | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | ELECTRON MICROSCOPY | 6.3 | 1781 |
45 | 4V6I|1|CA | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | ELECTRON MICROSCOPY | 8.8 | 1721 |