#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A6 (rep)18S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
24U4R|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
34U50|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
44U4Q|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
54U3U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
64U52|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
74U4U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
84V88|1|A218S RIBOSOMAL RNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
94V8Z|1|B218S RIBOSOMAL RNASaccharomyces cerevisiaeCryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.62014-07-09
104V8Y|1|B218S RIBOSOMAL RNASaccharomyces cerevisiaeCryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.32014-07-09
114U4R|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
125FCJ|1|618S ribosomal RNASaccharomyces cerevisiaeStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
135I4L|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
144U3U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
155DC3|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
165FCI|1|618S ribosomal RNASaccharomyces cerevisiaeStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
174U3N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
184U4N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
194U55|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
204U6F|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
214U4Y|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
224U53|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
234U4Q|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
244U4U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
254U4Z|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
264U4N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
274U52|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
284U3M|1|618S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
294U51|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
304U3M|1|218S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
314U55|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
324U51|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
334U4Z|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
345I4L|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
354U3N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
364U50|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
374U56|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
384U4Y|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
394U53|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
404U6F|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
415DC3|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
425FCJ|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
435FCI|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
444U56|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
453J6Y|1|1S18S ribosomal RNASaccharomyces cerevisiaeS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.12014-06-11
464U4O|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
473J78|1|1S18S ribosomal RNASaccharomyces cerevisiaeStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.32014-08-06
483J77|1|1S18S ribosomal RNASaccharomyces cerevisiaeStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.22014-08-06
493J6X|1|1S18S ribosomal RNASaccharomyces cerevisiaeS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.12014-06-11
504U4O|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
514V7R|1|C118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
524V7R|1|A118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
534V6I|1|CA18S rRNASaccharomyces cerevisiaeLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.82014-07-09

Release history

Release2.812.822.832.842.852.862.872.882.892.90
Date2016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-26

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14U4O|1|6Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61791
24U50|1|6Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
34U53|1|6Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31795
44U55|1|6Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
54U51|1|6Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
65I4L|1|6Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
74U4N|1|6Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
84U4U|1|6Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
94U4Q|1|6Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
104U4Z|1|6Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
114U3N|1|6Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
124U3M|1|6Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
134U4R|1|6Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
144U3U|1|6Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
154U6F|1|6Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
165FCI|1|6Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41796
175FCJ|1|6Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11796
184U52|1|6Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
194U56|1|6Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451795
204U4Y|1|6Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
215DC3|1|6Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251796
224V88|1|A6The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31770
234V7R|1|C1Yeast 80S ribosome.X-RAY DIFFRACTION41789
244V7R|1|A1Yeast 80S ribosome.X-RAY DIFFRACTION41789
254U4O|1|2Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61750
265DC3|1|2Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251782
275FCI|1|2Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41782
285FCJ|1|2Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11782
294U3N|1|2Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
304U4Y|1|2Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
314U3M|1|2Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
324U4R|1|2Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
334U3U|1|2Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
344U6F|1|2Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
354V8Z|1|B2Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.61768
364V8Y|1|B2Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.31768
374V88|1|A2The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31768
385I4L|1|2Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
394U4N|1|2Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
404U4U|1|2Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
414U4Q|1|2Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
424U50|1|2Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
434U53|1|2Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31750
444U4Z|1|2Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
454U55|1|2Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
464U51|1|2Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
474U52|1|2Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
484U56|1|2Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451750
493J6Y|1|1SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.11781
503J6X|1|1SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.11781
513J77|1|1SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.21781
523J78|1|1SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.31781
534V6I|1|CALocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.81721