#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A6 (rep)18S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
25TBW|1|sR18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
34V88|1|A218S RIBOSOMAL RNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
45TBW|1|A18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
56HHQ|1|sR18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
65OBM|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
75I4L|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
85MEI|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
95NDW|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
105LYB|1|618S rRNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
115I4L|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
125MEI|1|A18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
135OBM|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
145ON6|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
156HHQ|1|A18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
165NDW|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
175LYB|1|218S rRNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
185ON6|1|A18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
195NDV|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
205NDV|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
215NDG|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
225NDG|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
235TGM|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
245TGM|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
254V7R|1|A118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
264V7R|1|C118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
275DAT|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
285TGA|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
295DGE|1|618S ribosomal RNASaccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
305DGV|1|6Saccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
315DGF|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
325DC3|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
335DAT|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
345TGA|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
355DGV|1|2Saccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
365DGE|1|218S ribosomal RNASaccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
375DGF|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
385DC3|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
396T4Q|1|C218S rRNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.62019-12-25
404U4R|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
416WOO|1|218S ribosomal RNASaccharomyces cerevisiaeCryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.92020-09-23
426TB3|1|2Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.82020-04-22
436SNT|1|2Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeYeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.82020-03-04
444U3U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
454U4R|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
467A1G|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY32020-10-14
476ZVI|1|h18S rRNASaccharomyces cerevisiaeMbf1-ribosome complexELECTRON MICROSCOPY32020-09-09
484U3U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
494U3M|1|618S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
504U4Q|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
514U4U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
524U52|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
534U3M|1|218S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
544U6F|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
557RR5|1|C218S rRNAStructure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.232021-11-10
564U4N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
574U52|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
584U4U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
594U4Q|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
606Q8Y|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.12019-03-13
614U4Z|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
624U6F|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
637B7D|1|218S rRNAYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.32021-03-10
644U4Y|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
654U3N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
666SV4|1|2b18S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
676SV4|1|2c18S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
684U55|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
696XIR|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.22020-08-26
706T7T|1|C218S rRNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.12019-12-25
715M1J|1|2218S ribosomal RNASaccharomyces cerevisiaeNonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.32017-01-18
724U4Z|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
734U4N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
744U50|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
754U51|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
766T7I|1|C218S ribosomal RNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.22019-12-25
774U3N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
784U4Y|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
794U51|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
806TNU|1|218S rRNASaccharomyces cerevisiaeYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.12020-04-22
814U55|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
826S47|1|BA18S rRNA (1707-MER)Saccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.282019-07-24
836FAI|1|220S ribosomal RNASaccharomyces cerevisiaeStructure of a eukaryotic cytoplasmic pre-40S ribosomal subunitELECTRON MICROSCOPY3.42018-02-28
844U53|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
855JUP|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.52016-10-05
864U50|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
876Z6K|1|C218S rRNASaccharomyces cerevisiaeCryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.42020-07-29
886Z6J|1|C218S rRNASaccharomyces cerevisiaeCryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.42020-07-29
896RBD|1|220S ribosomal RNASaccharomyces cerevisiaeState 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.472019-06-26
904U53|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
916SV4|1|218S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
924U56|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
934U56|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
947NRC|1|S218S rRNA (1771-MER)Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.92021-05-05
955MC6|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.82017-01-18
966T83|1|2b18S rRNASaccharomyces cerevisiaeStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY42019-12-25
976T83|1|a18S rRNASaccharomyces cerevisiaeStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY42019-12-25
985JUO|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
995JUT|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1005JUU|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1016RBE|1|218S ribosomal RNASaccharomyces cerevisiaeState 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.82019-06-26
1026EML|1|2pre-18S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiaeELECTRON MICROSCOPY3.62017-11-29
1036GQB|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.92018-07-11
1046Y7C|1|220S ribosomal RNASaccharomyces cerevisiaeEarly cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)ELECTRON MICROSCOPY3.82020-03-18
1055JUS|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.22016-10-05
1066GQV|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY42018-07-11
1076XIQ|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.22020-08-26
1087NRD|1|S2TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequenceStructure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY4.362021-04-14
1094U4O|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
1104U4O|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
1114V8Y|1|B218S RIBOSOMAL RNASaccharomyces cerevisiaeCryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.32014-07-09
1126GQ1|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)ELECTRON MICROSCOPY4.42018-07-11
1135LL6|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiationELECTRON MICROSCOPY3.92017-04-12
1146I7O|1|2b18S ribosomal RNASaccharomyces cerevisiaeThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.32019-01-16
1156I7O|1|218S ribosomal RNASaccharomyces cerevisiaeThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.32019-01-16
1166ZCE|1|A18S ribosomal RNA (1719-MER)Saccharomyces cerevisiaeStructure of a yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY5.32020-10-07
1173J6Y|1|1S18S ribosomal RNASaccharomyces cerevisiaeS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.12014-06-11
1183J6X|1|1S18S ribosomal RNASaccharomyces cerevisiaeS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.12014-06-11
1193J77|1|1S18S ribosomal RNASaccharomyces cerevisiaeStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.22014-08-06
1203J78|1|1S18S ribosomal RNASaccharomyces cerevisiaeStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.32014-08-06
1216ZU9|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of a yeast ABCE1-bound 48S initiation complexELECTRON MICROSCOPY6.22020-10-28
1224V8Z|1|B218S RIBOSOMAL RNASaccharomyces cerevisiaeCryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.62014-07-09
1234V6I|1|CA18S rRNASaccharomyces cerevisiaeLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.82014-07-09

Release history

Release3.2043.2053.2063.207
Date2021-11-102021-11-172021-11-242021-12-01

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16EML|1|2Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiaeELECTRON MICROSCOPY3.61675
26Y7C|1|2Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)ELECTRON MICROSCOPY3.81731
36RBD|1|2State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.471777
46FAI|1|2Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunitELECTRON MICROSCOPY3.41775
56RBE|1|2State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.81750
65NDW|1|6Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71736
75NDG|1|6Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71700
85DGE|1|6Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451796
95DC3|1|6Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251796
105DGV|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11796
115TGM|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51796
125DGF|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31796
135DAT|1|6Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151796
145MEI|1|6Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51783
155ON6|1|6Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.11783
166HHQ|1|sRCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11783
175TBW|1|sRCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31783
184U4Y|1|6Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
194U3M|1|6Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
204U4R|1|6Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
214U3U|1|6Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
224U3N|1|6Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
234U6F|1|6Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
244V88|1|A6The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31770
255LYB|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251796
265TGA|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31796
275I4L|1|6Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
284U4N|1|6Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
294U4U|1|6Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
304U4Q|1|6Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
314U4Z|1|6Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
324U55|1|6Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
334U51|1|6Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
344U56|1|6Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451795
354U52|1|6Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
364U50|1|6Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
374U53|1|6Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31795
384U4O|1|6Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61791
395OBM|1|6Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.41739
405NDV|1|6Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31683
414V7R|1|C1Yeast 80S ribosome.X-RAY DIFFRACTION41789
424V7R|1|A1Yeast 80S ribosome.X-RAY DIFFRACTION41789
435NDG|1|2Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71688
445NDW|1|2Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71770
455OBM|1|2Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.41712
465DAT|1|2Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151782
475DGF|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31782
485DGE|1|2Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451782
495DC3|1|2Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251782
505DGV|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11782
515TGA|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31782
525LYB|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251782
534V8Y|1|B2Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.31768
544V88|1|A2The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31768
554V8Z|1|B2Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.61768
564U4Y|1|2Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
575TBW|1|ACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31781
586HHQ|1|ACrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
595ON6|1|ACrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.11781
605MEI|1|ACrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51781
614U3M|1|2Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
624U3U|1|2Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
634U4R|1|2Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
644U6F|1|2Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
654U4Q|1|2Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
664U4U|1|2Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
674U4N|1|2Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
685I4L|1|2Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
694U3N|1|2Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
704U4Z|1|2Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
714U55|1|2Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
724U51|1|2Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
734U53|1|2Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31750
744U50|1|2Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
754U52|1|2Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
764U56|1|2Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451750
775TGM|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51782
784U4O|1|2Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61750
795NDV|1|2Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31712
806ZCE|1|AStructure of a yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY5.31719
815JUP|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.51781
825JUS|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.21781
835JUT|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY41781
845JUO|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY41781
857A1G|1|2Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY31771
863J6X|1|1SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.11781
873J6Y|1|1SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.11781
886GQV|1|2Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY41776
896GQ1|1|2Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)ELECTRON MICROSCOPY4.41776
906GQB|1|2Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.91776
916XIQ|1|2Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.21743
925MC6|1|2Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.81767
935LL6|1|2Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiationELECTRON MICROSCOPY3.91325
946Q8Y|1|2Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.11767
956T83|1|2bStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY41771
966T7T|1|C2Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.11771
976T7I|1|C2Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.21771
986T4Q|1|C2Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.61771
996SNT|1|2Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.81771
1006TB3|1|2yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.81771
1017B7D|1|2Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.31771
1026ZU9|1|2Structure of a yeast ABCE1-bound 48S initiation complexELECTRON MICROSCOPY6.21771
1037NRC|1|S2Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.91771
1046TNU|1|2Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.11771
1057RR5|1|C2Structure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.231771
1066WOO|1|2CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.91780
1075M1J|1|22Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.31781
1083J77|1|1SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.21781
1093J78|1|1SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.31781
1105JUU|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY41781
1116SV4|1|2The cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
1126I7O|1|2The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.31758
1136T83|1|aStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY41758
1146S47|1|BASaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.281707
1156Z6K|1|C2Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.41700
1166Z6J|1|C2Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.41700
1176SV4|1|2cThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
1186I7O|1|2bThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.31758
1196SV4|1|2bThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
1207NRD|1|S2Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY4.361783
1216ZVI|1|hMbf1-ribosome complexELECTRON MICROSCOPY31758
1226XIR|1|2Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.21708
1234V6I|1|CALocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.81721