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Equivalence class NR_20.0_06650.19 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17O7Y|1|B5+ 7O7Y|1|B8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)Electron microscopy2.239202021-06-02
27O7Z|1|B5+ 7O7Z|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)Electron microscopy2.439202021-06-02
37O80|1|B5+ 7O80|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteElectron microscopy2.939202021-06-02
47OBR|1|5+ 7OBR|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002RNC-SRP early complexElectron microscopy2.836492021-07-21
56SGC|1|54+ 6SGC|1|84Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome stalled on a poly(A) tailElectron microscopy2.837542019-12-04
67O81|1|B5+ 7O81|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotElectron microscopy3.139202021-06-02
77NWI|1|5+ 7NWI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA+BlaS, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SElectron microscopy3.1338182021-07-07
86R5Q|1|5+ 6R5Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of XBP1u-paused ribosome nascent chain complex (post-state)Electron microscopy336942019-07-10
96P5I|1|5+ 6P5I|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)Electron microscopy3.137452019-09-18
106R6P|1|5+ 6R6P|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of XBP1u-paused ribosome nascent chain complex (rotated state)Electron microscopy3.138182019-07-10
116P5J|1|5+ 6P5J|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)Electron microscopy3.137452019-09-18
126P5K|1|5+ 6P5K|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)Electron microscopy3.137452019-09-18
136ZVK|1|e2+ 6ZVK|1|h2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF02543 + RF00002The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.4940762020-12-23
146P5N|1|5+ 6P5N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1Electron microscopy3.237452019-09-25
157NFX|1|5+ 7NFX|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AElectron microscopy3.236492021-06-02
166D9J|1|5+ 6D9J|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.237452018-06-06
176T59|1|54+ 6T59|1|84Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexElectron microscopy3.1136942019-11-27
185LZS|1|5+ 5LZS|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.3136942016-11-30
197A01|1|e2+ 7A01|1|h2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF02543 + RF00002The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.639812020-12-30
205LZV|1|5+ 5LZV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.3536942016-11-30
216MTD|1|5+ 6MTD|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)Electron microscopy3.337482018-11-21
226D90|1|5+ 6D90|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.237452018-06-06
236MTE|1|5+ 6MTE|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)Electron microscopy3.437482018-11-21
246MTC|1|5+ 6MTC|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)Electron microscopy3.437482018-11-21
256GZ5|1|A2+ 6GZ5|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)Electron microscopy3.537692018-12-05
265LZZ|1|5+ 5LZZ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.4736942016-11-30
275LZW|1|5+ 5LZW|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.5336942016-11-30
286GZ3|1|A2+ 6GZ3|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)Electron microscopy3.637692018-12-05
295LZX|1|5+ 5LZX|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.6736942016-11-30
306GZ4|1|A2+ 6GZ4|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)Electron microscopy3.637692018-12-05
315LZT|1|5+ 5LZT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.6536942016-11-30
326MTB|1|5+ 6MTB|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)Electron microscopy3.637482018-11-21
337NWG|1|51+ 7NWG|1|81Large subunit ribosomal RNA + 5.8S ribosomal RNA28S Ribosomal RNA, 5.8S Ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.Electron microscopy3.837772021-07-07
346R6G|1|5+ 6R6G|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of XBP1u-paused ribosome nascent chain complex with SRP.Electron microscopy3.736942019-07-10
356HCJ|1|51+ 6HCJ|1|81Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsElectron microscopy3.837862018-10-17
365LZU|1|5+ 5LZU|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.7536942016-11-30
376FRK|1|5+ 6FRK|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexElectron microscopy3.738142018-03-28
386R7Q|1|5+ 6R7Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of XBP1u-paused ribosome nascent chain complex with Sec61.Electron microscopy3.936942019-07-10
396HCF|1|52+ 6HCF|1|82Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.937852018-10-17
405LZY|1|5+ 5LZY|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.9936942016-11-30
413JAH|1|5+ 3JAH|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.4538182015-08-12
427NWH|1|5+ 7NWH|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S Ribosomal RNA, 5.8S Ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.Electron microscopy4.136942021-07-07
436FTI|1|u+ 6FTI|1|wLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S RibosomeElectron microscopy4.238182018-03-21
443JAG|1|5+ 3JAG|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.6538182015-08-12
453JAI|1|5+ 3JAI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.6538182015-08-12
463J92|1|5+ 3J92|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure and assembly pathway of the ribosome quality control complexElectron microscopy3.638182015-01-21
476FTJ|1|u+ 6FTJ|1|wLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S RibosomeElectron microscopy4.738182018-03-21
486HCQ|1|51+ 6HCQ|1|81Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit collided di-ribosome (collided monosome)Electron microscopy6.537862018-10-17
496HCM|1|52+ 6HCM|1|82Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit collided di-ribosome (stalled monosome)Electron microscopy6.837852018-10-17
504UJE|1|A2+ 4UJE|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S Ribosomal RNA, 5.8S Ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementElectron microscopy6.937732014-07-16
516FTG|1|u+ 6FTG|1|wLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranesElectron microscopy9.138182018-03-21
523JAN|1|5+ 3JAN|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.7538142015-08-05
533JAJ|1|5+ 3JAJ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.7538142015-08-05
544UJD|1|A2+ 4UJD|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S Ribosomal RNA, 5.8S Ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateElectron microscopy8.937732014-07-30
554D67|1|2+ 4D67|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S RRNA, 5.8S RRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy937732015-03-04
564D5Y|1|2+ 4D5Y|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S Ribosomal RNA, 5.8S Ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy937732015-03-04
574UJC|1|A2+ 4UJC|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF02543 + RF00002mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateElectron microscopy9.537732014-07-30

Release history

Release3.1883.1893.1903.1913.1923.193
Date2021-07-212021-07-282021-08-042021-08-112021-08-182021-08-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_06650.19NR_20.0_06650.183.188(56) 3J92|1|5+3J92|1|8, 3JAG|1|5+3JAG|1|8, 3JAH|1|5+3JAH|1|8, 3JAI|1|5+3JAI|1|8, 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8, 4D5Y|1|2+4D5Y|1|3, 4D67|1|2+4D67|1|3, 4UJC|1|A2+4UJC|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJE|1|A2+4UJE|1|A3, 5LZS|1|5+5LZS|1|8, 5LZT|1|5+5LZT|1|8, 5LZU|1|5+5LZU|1|8, 5LZV|1|5+5LZV|1|8, 5LZW|1|5+5LZW|1|8, 5LZX|1|5+5LZX|1|8, 5LZY|1|5+5LZY|1|8, 5LZZ|1|5+5LZZ|1|8, 6D90|1|5+6D90|1|8, 6D9J|1|5+6D9J|1|8, 6FRK|1|5+6FRK|1|8, 6FTG|1|u+6FTG|1|w, 6FTI|1|u+6FTI|1|w, 6FTJ|1|u+6FTJ|1|w, 6GZ3|1|A2+6GZ3|1|A3, 6GZ4|1|A2+6GZ4|1|A3, 6GZ5|1|A2+6GZ5|1|A3, 6HCF|1|52+6HCF|1|82, 6HCJ|1|51+6HCJ|1|81, 6HCM|1|52+6HCM|1|82, 6HCQ|1|51+6HCQ|1|81, 6MTB|1|5+6MTB|1|8, 6MTC|1|5+6MTC|1|8, 6MTD|1|5+6MTD|1|8, 6MTE|1|5+6MTE|1|8, 6P5I|1|5+6P5I|1|8, 6P5J|1|5+6P5J|1|8, 6P5K|1|5+6P5K|1|8, 6P5N|1|5+6P5N|1|8, 6R5Q|1|5+6R5Q|1|8, 6R6G|1|5+6R6G|1|8, 6R6P|1|5+6R6P|1|8, 6R7Q|1|5+6R7Q|1|8, 6SGC|1|54+6SGC|1|84, 6T59|1|54+6T59|1|84, 6ZVK|1|e2+6ZVK|1|h2, 7A01|1|e2+7A01|1|h2, 7NFX|1|5+7NFX|1|8, 7NWG|1|51+7NWG|1|81, 7NWH|1|5+7NWH|1|8, 7NWI|1|5+7NWI|1|8, 7O7Y|1|B5+7O7Y|1|B8, 7O7Z|1|B5+7O7Z|1|B8, 7O80|1|B5+7O80|1|B8, 7O81|1|B5+7O81|1|B8(1) 7OBR|1|5+7OBR|1|8(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_06650.19NR_20.0_06650.203.194(57) 3J92|1|5+3J92|1|8, 3JAG|1|5+3JAG|1|8, 3JAH|1|5+3JAH|1|8, 3JAI|1|5+3JAI|1|8, 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8, 4D5Y|1|2+4D5Y|1|3, 4D67|1|2+4D67|1|3, 4UJC|1|A2+4UJC|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJE|1|A2+4UJE|1|A3, 5LZS|1|5+5LZS|1|8, 5LZT|1|5+5LZT|1|8, 5LZU|1|5+5LZU|1|8, 5LZV|1|5+5LZV|1|8, 5LZW|1|5+5LZW|1|8, 5LZX|1|5+5LZX|1|8, 5LZY|1|5+5LZY|1|8, 5LZZ|1|5+5LZZ|1|8, 6D90|1|5+6D90|1|8, 6D9J|1|5+6D9J|1|8, 6FRK|1|5+6FRK|1|8, 6FTG|1|u+6FTG|1|w, 6FTI|1|u+6FTI|1|w, 6FTJ|1|u+6FTJ|1|w, 6GZ3|1|A2+6GZ3|1|A3, 6GZ4|1|A2+6GZ4|1|A3, 6GZ5|1|A2+6GZ5|1|A3, 6HCF|1|52+6HCF|1|82, 6HCJ|1|51+6HCJ|1|81, 6HCM|1|52+6HCM|1|82, 6HCQ|1|51+6HCQ|1|81, 6MTB|1|5+6MTB|1|8, 6MTC|1|5+6MTC|1|8, 6MTD|1|5+6MTD|1|8, 6MTE|1|5+6MTE|1|8, 6P5I|1|5+6P5I|1|8, 6P5J|1|5+6P5J|1|8, 6P5K|1|5+6P5K|1|8, 6P5N|1|5+6P5N|1|8, 6R5Q|1|5+6R5Q|1|8, 6R6G|1|5+6R6G|1|8, 6R6P|1|5+6R6P|1|8, 6R7Q|1|5+6R7Q|1|8, 6SGC|1|54+6SGC|1|84, 6T59|1|54+6T59|1|84, 6ZVK|1|e2+6ZVK|1|h2, 7A01|1|e2+7A01|1|h2, 7NFX|1|5+7NFX|1|8, 7NWG|1|51+7NWG|1|81, 7NWH|1|5+7NWH|1|8, 7NWI|1|5+7NWI|1|8, 7O7Y|1|B5+7O7Y|1|B8, 7O7Z|1|B5+7O7Z|1|B8, 7O80|1|B5+7O80|1|B8, 7O81|1|B5+7O81|1|B8, 7OBR|1|5+7OBR|1|8(0) (1) 7MDZ|1|5+7MDZ|1|8

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17A01|1|e2+ 7A01|1|h2The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.63981
26ZVK|1|e2+ 6ZVK|1|h2The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.494076
37NWI|1|5+ 7NWI|1|8Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.133818
46R6P|1|5+ 6R6P|1|8Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.13818
57OBR|1|5+ 7OBR|1|8RNC-SRP early complexELECTRON MICROSCOPY2.83649
67NFX|1|5+ 7NFX|1|8Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AELECTRON MICROSCOPY3.23649
73JAG|1|5+ 3JAG|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.653818
83JAH|1|5+ 3JAH|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.453818
93JAI|1|5+ 3JAI|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.653818
106FTJ|1|u+ 6FTJ|1|wCryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S RibosomeELECTRON MICROSCOPY4.73818
116FTG|1|u+ 6FTG|1|wSubtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranesELECTRON MICROSCOPY9.13818
126FTI|1|u+ 6FTI|1|wCryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S RibosomeELECTRON MICROSCOPY4.23818
136FRK|1|5+ 6FRK|1|8Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.73814
143JAJ|1|5+ 3JAJ|1|8Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753814
153JAN|1|5+ 3JAN|1|8Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753814
163J92|1|5+ 3J92|1|8Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.63818
176GZ3|1|A2+ 6GZ3|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.63769
186GZ4|1|A2+ 6GZ4|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.63769
196GZ5|1|A2+ 6GZ5|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.53769
207O80|1|B5+ 7O80|1|B8Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.93920
217O7Z|1|B5+ 7O7Z|1|B8Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.43920
227O7Y|1|B5+ 7O7Y|1|B8Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.23920
237O81|1|B5+ 7O81|1|B8Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.13920
245LZY|1|5+ 5LZY|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.993694
255LZZ|1|5+ 5LZZ|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.473694
265LZX|1|5+ 5LZX|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.673694
275LZW|1|5+ 5LZW|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.533694
285LZT|1|5+ 5LZT|1|8Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.653694
296SGC|1|54+ 6SGC|1|84Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.83754
306MTB|1|5+ 6MTB|1|8Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.63748
316MTC|1|5+ 6MTC|1|8Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.43748
326MTD|1|5+ 6MTD|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.33748
336MTE|1|5+ 6MTE|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.43748
345LZS|1|5+ 5LZS|1|8Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.313694
355LZU|1|5+ 5LZU|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.753694
365LZV|1|5+ 5LZV|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.353694
376R7Q|1|5+ 6R7Q|1|8Structure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.93694
386R5Q|1|5+ 6R5Q|1|8Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY33694
396R6G|1|5+ 6R6G|1|8Structure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.73694
406T59|1|54+ 6T59|1|84Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.113694
416P5K|1|5+ 6P5K|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.13745
426P5I|1|5+ 6P5I|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.13745
436P5J|1|5+ 6P5J|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.13745
446P5N|1|5+ 6P5N|1|8Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.23745
456HCM|1|52+ 6HCM|1|82Structure of the rabbit collided di-ribosome (stalled monosome)ELECTRON MICROSCOPY6.83785
466HCF|1|52+ 6HCF|1|82Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.93785
476D90|1|5+ 6D90|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.23745
486D9J|1|5+ 6D9J|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.23745
497NWH|1|5+ 7NWH|1|8Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.ELECTRON MICROSCOPY4.13694
506HCQ|1|51+ 6HCQ|1|81Structure of the rabbit collided di-ribosome (collided monosome)ELECTRON MICROSCOPY6.53786
516HCJ|1|51+ 6HCJ|1|81Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.83786
527NWG|1|51+ 7NWG|1|81Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.ELECTRON MICROSCOPY3.83777
534UJE|1|A2+ 4UJE|1|A3Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.93773
544UJC|1|A2+ 4UJC|1|A3mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.53773
554UJD|1|A2+ 4UJD|1|A3mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.93773
564D5Y|1|2+ 4D5Y|1|3Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY93773
574D67|1|2+ 4D67|1|3Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY93773

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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