#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V49|1|AW (rep)Transfer RNAtRNA-Phe, mRNAEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.72014-07-09
24V49|1|AVTransfer RNAtRNA-Phe, mRNAEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.72014-07-09
31ZO3|1|ATransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.82005-06-14
41ZO3|1|BTransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.82005-06-14
51ZO1|1|FTransfer RNAP/I-site tRNAEscherichia coliBacteriaRF00005IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexElectron microscopy13.82005-06-14
64V65|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
73WC2|1|P76mer-tRNACrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-ray diffraction3.642013-12-18
84V65|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
93DEG|1|ATransfer RNAA/L-tRNAEscherichia coliBacteriaRF00005Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPElectron microscopy10.92008-08-19
104V42|1|ABTRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSCrystal structure of the ribosome at 5.5 A resolution.X-ray diffraction5.52014-07-09
111JGP|1|BtRNA(Phe), MESSENGER RNA MV36The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction72001-07-20
121JGQ|1|BtRNA(Phe)The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction52001-07-20
131JGO|1|BtRNA(Phe), MESSENGER RNA MK27The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction5.62001-07-20
141MJ1|1|DTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy132002-11-01
151TTT|1|FTRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
164V4T|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.462014-07-09
174V4R|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.92014-07-09
184V4S|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.762014-07-09
194V4W|1|AUTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
204V4V|1|AUTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
214V4V|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
224V4W|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
234V4V|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
244V69|1|AYA/T-site tRNA Phe, mRNATernary complex-bound E.coli 70S ribosome.Electron microscopy6.72014-07-09
251EVV|1|ATransfer RNAPHENYLALANINE TRANSFER RNASaccharomycesEukaryaRF00005CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-ray diffraction22000-05-01
264V42|1|ACTRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSCrystal structure of the ribosome at 5.5 A resolution.X-ray diffraction5.52014-07-09
271ML5|1|BTransfer RNAT-RNA(PHE), A- AND P-SITE MESSENGER RNA CODONSEscherichia coliBacteriaRF00005Structure of the E. coli ribosomal termination complex with release factor 2Electron microscopy142003-01-14
281MJ1|1|CTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy132002-11-01
291JGP|1|CtRNA(Phe), MESSENGER RNA MV36The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction72001-07-20
301JGQ|1|CtRNA(Phe), MESSENGER RNA MF36The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction52001-07-20
311JGO|1|CtRNA(Phe), MESSENGER RNA MK27The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction5.62001-07-20
321SZ1|1|ET-RNA (76-MER)Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-ray diffraction6.212004-08-10
331TTT|1|ETRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
341SZ1|1|FT-RNA (76-MER)Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-ray diffraction6.212004-08-10
354V66|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
364V4W|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
373WC2|1|Q76mer-tRNACrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-ray diffraction3.642013-12-18
384V66|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
391TTT|1|DTRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
404V66|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
414V65|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
424V4S|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.762014-07-09
434V4T|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.462014-07-09
444V4R|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.92014-07-09
454V48|1|A6Transfer RNAtRNA-PHEEscherichia coliBacteriaRF00005Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeElectron microscopy11.52014-07-09
461QZB|1|BPhe-tRNACoordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateElectron microscopy92003-11-04
471QZA|1|BPhe-tRNACoordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeElectron microscopy102003-11-04
483EP2|1|YTransfer RNAtRNAEscherichia coliBacteriaRF00005Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMElectron microscopy92008-12-16
493EQ3|1|YTransfer RNAtRNAEscherichia coliBacteriaRF00005Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMElectron microscopy92008-12-16

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.119
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V65|1|AAStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
24V69|1|AYTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.776
31TTT|1|FPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
41TTT|1|EPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
51TTT|1|DPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
64V66|1|APStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
74V65|1|APStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
84V66|1|AEStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY976
94V65|1|AEStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY976
104V4T|1|AWCrystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4673
114V4R|1|AWCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.973
124V4S|1|AWCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7673
131EVV|1|ACRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION262
144V4W|1|AWStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
151MJ1|1|DFITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
161ZO3|1|BThe P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
171ZO3|1|AThe P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
181ZO1|1|FIF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexELECTRON MICROSCOPY13.876
194V4V|1|AVStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
204V4V|1|AWStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
214V4V|1|AUStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
224V4W|1|AUStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
234V4W|1|AVStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
244V66|1|AAStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
251SZ1|1|EMechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
261SZ1|1|FMechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
274V49|1|AWCrystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
281JGO|1|BThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
291JGQ|1|BThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
301JGP|1|BThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
314V42|1|ABCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
321ML5|1|BStructure of the E. coli ribosomal termination complex with release factor 2ELECTRON MICROSCOPY1462
331MJ1|1|CFITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
344V42|1|ACCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
351JGQ|1|CThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
361JGP|1|CThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
371JGO|1|CThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
384V49|1|AVCrystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
394V4T|1|AVCrystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4676
404V4S|1|AVCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7676
414V4R|1|AVCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.976
423WC2|1|PCrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6474
433WC2|1|QCrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6473
443DEG|1|AComplex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.962
454V48|1|A6Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.576
463EQ3|1|YModel of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY974
471QZB|1|BCoordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateELECTRON MICROSCOPY975
483EP2|1|YModel of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY974
491QZA|1|BCoordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY1075
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