Equivalence class NR_20.0_08518.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7QCA|1|S60 (rep) | Small subunit ribosomal RNA | RNA SSU | Spraguea lophii 42_110 | Eukarya | RF02542 | Spraguea lophii ribosome | Electron microscopy | 2.78 | 2022-11-30 |
| 2 | 8BR3|1|S60 | Small subunit ribosomal RNA | RNA 16S | Spraguea lophii 42_110 | Eukarya | RF02542 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | Electron microscopy | 9.55 | 2023-04-12 |
| 3 | 8P5D|1|S60 | Small subunit ribosomal RNA | RNA 16S | Spraguea lophii 42_110 | Eukarya | RF02542 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | Electron microscopy | 9.55 | 2023-06-21 |
| 4 | 7QJH|1|R60 | Small subunit ribosomal RNA | RNA 16S | Spraguea lophii 42_110 | Eukarya | RF02542 | Spraguea lophii ribosome dimer | Electron microscopy | 10 | 2022-12-28 |
| 5 | 7QJH|1|S60 | Small subunit ribosomal RNA | RNA 16S | Spraguea lophii 42_110 | Eukarya | RF02542 | Spraguea lophii ribosome dimer | Electron microscopy | 10 | 2022-12-28 |
| 6 | 8P60|1|R60 | Small subunit ribosomal RNA | RNA 16S | Spraguea lophii 42_110 | Eukarya | RF02542 | Spraguea lophii ribosome dimer | Electron microscopy | 11.3 | 2023-06-21 |
| 7 | 8P60|1|S60 | Small subunit ribosomal RNA | RNA 16S | Spraguea lophii 42_110 | Eukarya | RF02542 | Spraguea lophii ribosome dimer | Electron microscopy | 11.3 | 2023-06-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_08518.1 | NR_20.0_70847.2 | 3.288 | (4) 7QCA|1|S60, 8BR3|1|S60, 7QJH|1|S60, 7QJH|1|R60 | (3) 8P5D|1|S60, 8P60|1|S60, 8P60|1|R60 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_08518.1 | NR_20.0_62666.1 | 3.299 | (4) 7QCA|1|S60, 8P60|1|S60, 8P5D|1|S60, 8P60|1|R60 | (3) 7QJH|1|R60, 8BR3|1|S60, 7QJH|1|S60 | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7QJH|1|R60 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 10 | 1354 |
| 2 | 8P60|1|R60 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 11.3 | 1354 |
| 3 | 8P5D|1|S60 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | ELECTRON MICROSCOPY | 9.55 | 1354 |
| 4 | 8BR3|1|S60 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | ELECTRON MICROSCOPY | 9.55 | 1354 |
| 5 | 7QJH|1|S60 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 10 | 1354 |
| 6 | 8P60|1|S60 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 11.3 | 1354 |
| 7 | 7QCA|1|S60 | Spraguea lophii ribosome | ELECTRON MICROSCOPY | 2.78 | 1354 |