Equivalence class NR_20.0_09544.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6Q1H|1|D (rep) | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | |||
| 2 | 6Q1H|1|H | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | |||
| 3 | 6P7P|1|F | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 4 | 6P7P|1|E | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 5 | 6P7P|1|D | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 6 | 4OAU|1|A | RNA (5'-R(P*A*AP*A)-2') | Complete human RNase L in complex with biological activators. | X-ray diffraction | 2.6 | 2014-03-12 | ||||
| 7 | 2A1R|1|C | 5'-R(*AP*AP*A)-3' | Crystal structure of PARN nuclease domain | X-ray diffraction | 2.6 | 2005-12-20 | ||||
| 8 | 2A1R|1|D | 5'-R(*AP*AP*A)-3' | Crystal structure of PARN nuclease domain | X-ray diffraction | 2.6 | 2005-12-20 | ||||
| 9 | 3GPQ|1|E | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 10 | 3GPQ|1|F | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 11 | 6O79|1|C | cyclic RNA cA3 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA3 | X-ray diffraction | 3 | 2019-07-31 | |||
| 12 | 6HYU|1|D | RNA (5'-R(*A*AP*A)-3') | synthetic construct | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-ray diffraction | 3.22 | 2019-08-28 | |||
| 13 | 1LAJ|1|R | 5'-R(*AP*AP*A)-3' | The Structure of Tomato Aspermy Virus by X-Ray Crystallography | X-ray diffraction | 3.4 | 2002-11-27 |
Release history
| Release | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_09544.1 | NR_20.0_65223.1 | 3.131 | (13) 4OAU|1|A, 6HYU|1|D, 6P7P|1|D, 2A1R|1|C, 6P7P|1|E, 2A1R|1|D, 6Q1H|1|D, 3GPQ|1|F, 6Q1H|1|H, 3GPQ|1|E, 1LAJ|1|R, 6P7P|1|F, 6O79|1|C | (0) | (11) 6WAN|1|G, 6WAN|1|L, 6VM6|1|K, 6VM6|1|H, 6WAN|1|K, 6WAN|1|H, 6VM6|1|J, 6VM6|1|G, 6WAN|1|J, 6VM6|1|I, 6WAN|1|I |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6HYU|1|D | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-RAY DIFFRACTION | 3.22 | 3 |
| 2 | 6P7P|1|F | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 3 | 6P7P|1|E | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 4 | 6P7P|1|D | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 5 | 6Q1H|1|H | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 6 | 6Q1H|1|D | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 7 | 6O79|1|C | Crystal structure of Csm1-Csm4 cassette in complex with cA3 | X-RAY DIFFRACTION | 3 | 3 |
| 8 | 2A1R|1|D | Crystal structure of PARN nuclease domain | X-RAY DIFFRACTION | 2.6 | 3 |
| 9 | 2A1R|1|C | Crystal structure of PARN nuclease domain | X-RAY DIFFRACTION | 2.6 | 3 |
| 10 | 3GPQ|1|F | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |
| 11 | 3GPQ|1|E | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |
| 12 | 1LAJ|1|R | The Structure of Tomato Aspermy Virus by X-Ray Crystallography | X-RAY DIFFRACTION | 3.4 | 3 |
| 13 | 4OAU|1|A | Complete human RNase L in complex with biological activators. | X-RAY DIFFRACTION | 2.6 | 3 |