Equivalence class NR_20.0_12406.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FLX|1|z (rep) | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | Mammalian 40S HCV-IRES complex | Electron microscopy | 3.9 | 2015-12-23 |
| 2 | 5A2Q|1|3 | Internal ribosome entry site | HCV IRES | Hepacivirus C | Viruses | RF00061 | Structure of the HCV IRES bound to the human ribosome | Electron microscopy | 3.9 | 2015-07-15 |
| 3 | 7SYW|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | Electron microscopy | 3.7 | 2022-07-13 |
| 4 | 7SYX|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | Electron microscopy | 3.7 | 2022-07-13 |
| 5 | 7SYN|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) | Electron microscopy | 4 | 2022-07-13 |
| 6 | 7SYT|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | Electron microscopy | 4.4 | 2022-07-13 |
| 7 | 7SYK|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) | Electron microscopy | 4.2 | 2022-07-13 |
| 8 | 5OA3|1|3 | Internal ribosome entry site | IRES mRNA | Hepacivirus C | Viruses | RF00061 | Human 40S-eIF2D-re-initiation complex | Electron microscopy | 4.2 | 2017-08-09 |
| 9 | 7SYG|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) | Electron microscopy | 4.3 | 2022-07-13 |
| 10 | 7SYU|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 11 | 7SYI|1|z | Internal ribosome entry site | HCV IRES | Hepacivirus C | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) | Electron microscopy | 4.5 | 2022-07-13 |
| 12 | 7SYL|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) | Electron microscopy | 4.5 | 2022-07-13 |
| 13 | 7SYH|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 14 | 7SYM|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) | Electron microscopy | 4.8 | 2022-07-13 |
| 15 | 7SYJ|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) | Electron microscopy | 4.8 | 2022-07-13 |
| 16 | 4UJD|1|BC | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
| 17 | 4UJC|1|AC | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
Release history
| Release | 3.239 |
|---|---|
| Date | 2022-07-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_12406.1 | NR_20.0_23001.1 | 3.239 | (2) 4UJC|1|AC, 4UJD|1|BC | (15) 7SYL|1|z, 7SYK|1|z, 7SYJ|1|z, 7SYI|1|z, 7SYH|1|z, 7SYG|1|z, 5OA3|1|3, 5FLX|1|z, 5A2Q|1|3, 7SYX|1|z, 7SYW|1|z, 7SYU|1|z, 7SYT|1|z, 7SYN|1|z, 7SYM|1|z | (0) |
| NR_20.0_12406.1 | NR_20.0_58054.1 | 3.239 | (2) 5A2Q|1|3, 5FLX|1|z | (15) 7SYN|1|z, 7SYM|1|z, 7SYL|1|z, 7SYK|1|z, 7SYJ|1|z, 7SYI|1|z, 7SYH|1|z, 7SYG|1|z, 5OA3|1|3, 4UJD|1|BC, 4UJC|1|AC, 7SYX|1|z, 7SYW|1|z, 7SYU|1|z, 7SYT|1|z | (0) |
| NR_20.0_12406.1 | NR_20.0_67426.1 | 3.239 | (1) 5OA3|1|3 | (16) 7SYT|1|z, 7SYN|1|z, 7SYM|1|z, 7SYL|1|z, 7SYK|1|z, 7SYJ|1|z, 7SYI|1|z, 7SYH|1|z, 7SYG|1|z, 5FLX|1|z, 5A2Q|1|3, 4UJD|1|BC, 4UJC|1|AC, 7SYX|1|z, 7SYW|1|z, 7SYU|1|z | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_12406.1 | NR_20.0_12406.2 | 3.240 | (17) 4UJD|1|BC, 7SYX|1|z, 4UJC|1|AC, 7SYW|1|z, 7SYU|1|z, 7SYT|1|z, 7SYN|1|z, 7SYM|1|z, 7SYL|1|z, 7SYK|1|z, 7SYJ|1|z, 7SYI|1|z, 7SYH|1|z, 7SYG|1|z, 5OA3|1|3, 5FLX|1|z, 5A2Q|1|3 | (0) | (1) 7SYV|1|z |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5OA3|1|3 | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 186 |
| 2 | 7SYN|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) | ELECTRON MICROSCOPY | 4 | 162 |
| 3 | 7SYL|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) | ELECTRON MICROSCOPY | 4.5 | 162 |
| 4 | 7SYM|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) | ELECTRON MICROSCOPY | 4.8 | 162 |
| 5 | 7SYX|1|z | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | ELECTRON MICROSCOPY | 3.7 | 188 |
| 6 | 7SYW|1|z | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | ELECTRON MICROSCOPY | 3.7 | 188 |
| 7 | 7SYT|1|z | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | ELECTRON MICROSCOPY | 4.4 | 188 |
| 8 | 7SYU|1|z | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | ELECTRON MICROSCOPY | 4.6 | 188 |
| 9 | 7SYK|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) | ELECTRON MICROSCOPY | 4.2 | 162 |
| 10 | 5FLX|1|z | Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 264 |
| 11 | 5A2Q|1|3 | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 257 |
| 12 | 7SYJ|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) | ELECTRON MICROSCOPY | 4.8 | 162 |
| 13 | 7SYI|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) | ELECTRON MICROSCOPY | 4.5 | 162 |
| 14 | 7SYH|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) | ELECTRON MICROSCOPY | 4.6 | 162 |
| 15 | 7SYG|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) | ELECTRON MICROSCOPY | 4.3 | 162 |
| 16 | 4UJC|1|AC | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 261 |
| 17 | 4UJD|1|BC | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 261 |