Equivalence class NR_20.0_12406.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7SYQ|1|z (rep) | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt) | Electron microscopy | 3.8 | 2022-07-27 |
| 2 | 5FLX|1|z | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | Mammalian 40S HCV-IRES complex | Electron microscopy | 3.9 | 2015-12-23 |
| 3 | 7SYV|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) | Electron microscopy | 3.9 | 2022-07-20 |
| 4 | 7SYS|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). | Electron microscopy | 3.5 | 2022-07-27 |
| 5 | 7SYP|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt) | Electron microscopy | 4 | 2022-07-27 |
| 6 | 7SYR|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). | Electron microscopy | 3.6 | 2022-07-27 |
| 7 | 5A2Q|1|3 | Internal ribosome entry site | HCV IRES | Hepacivirus C | Viruses | RF00061 | Structure of the HCV IRES bound to the human ribosome | Electron microscopy | 3.9 | 2015-07-15 |
| 8 | 7SYW|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | Electron microscopy | 3.7 | 2022-07-13 |
| 9 | 7SYX|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | Electron microscopy | 3.7 | 2022-07-13 |
| 10 | 7SYN|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) | Electron microscopy | 4 | 2022-07-13 |
| 11 | 7SYT|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | Electron microscopy | 4.4 | 2022-07-13 |
| 12 | 7SYK|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) | Electron microscopy | 4.2 | 2022-07-13 |
| 13 | 5OA3|1|3 | Internal ribosome entry site | IRES mRNA | Hepacivirus C | Viruses | RF00061 | Human 40S-eIF2D-re-initiation complex | Electron microscopy | 4.2 | 2017-08-09 |
| 14 | 7SYG|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) | Electron microscopy | 4.3 | 2022-07-13 |
| 15 | 7SYU|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 16 | 7SYI|1|z | Internal ribosome entry site | HCV IRES | Hepacivirus C | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) | Electron microscopy | 4.5 | 2022-07-13 |
| 17 | 7SYL|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) | Electron microscopy | 4.5 | 2022-07-13 |
| 18 | 7SYO|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII) | Electron microscopy | 4.6 | 2022-07-27 |
| 19 | 7SYH|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 20 | 7SYM|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) | Electron microscopy | 4.8 | 2022-07-13 |
| 21 | 7SYJ|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) | Electron microscopy | 4.8 | 2022-07-13 |
| 22 | 4UJD|1|BC | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
| 23 | 4UJC|1|AC | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
Release history
| Release | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
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| Date | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_12406.3 | NR_20.0_12406.2 | 3.241 | (18) 7SYL|1|z, 7SYW|1|z, 5OA3|1|3, 5FLX|1|z, 7SYK|1|z, 7SYV|1|z, 5A2Q|1|3, 7SYJ|1|z, 7SYU|1|z, 4UJD|1|BC, 7SYI|1|z, 7SYT|1|z, 4UJC|1|AC, 7SYH|1|z, 7SYN|1|z, 7SYG|1|z, 7SYM|1|z, 7SYX|1|z | (5) 7SYQ|1|z, 7SYS|1|z, 7SYO|1|z, 7SYP|1|z, 7SYR|1|z | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5FLX|1|z | Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 264 |
| 2 | 5A2Q|1|3 | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 257 |
| 3 | 7SYQ|1|z | Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt) | ELECTRON MICROSCOPY | 3.8 | 264 |
| 4 | 7SYP|1|z | Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt) | ELECTRON MICROSCOPY | 4 | 249 |
| 5 | 7SYV|1|z | Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) | ELECTRON MICROSCOPY | 3.9 | 258 |
| 6 | 7SYK|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) | ELECTRON MICROSCOPY | 4.2 | 162 |
| 7 | 7SYR|1|z | Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). | ELECTRON MICROSCOPY | 3.6 | 188 |
| 8 | 7SYS|1|z | Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). | ELECTRON MICROSCOPY | 3.5 | 188 |
| 9 | 7SYU|1|z | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | ELECTRON MICROSCOPY | 4.6 | 188 |
| 10 | 7SYT|1|z | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | ELECTRON MICROSCOPY | 4.4 | 188 |
| 11 | 7SYW|1|z | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | ELECTRON MICROSCOPY | 3.7 | 188 |
| 12 | 7SYX|1|z | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | ELECTRON MICROSCOPY | 3.7 | 188 |
| 13 | 7SYM|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) | ELECTRON MICROSCOPY | 4.8 | 162 |
| 14 | 7SYL|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) | ELECTRON MICROSCOPY | 4.5 | 162 |
| 15 | 7SYO|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII) | ELECTRON MICROSCOPY | 4.6 | 166 |
| 16 | 7SYN|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) | ELECTRON MICROSCOPY | 4 | 162 |
| 17 | 5OA3|1|3 | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 186 |
| 18 | 7SYJ|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) | ELECTRON MICROSCOPY | 4.8 | 162 |
| 19 | 7SYI|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) | ELECTRON MICROSCOPY | 4.5 | 162 |
| 20 | 7SYH|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) | ELECTRON MICROSCOPY | 4.6 | 162 |
| 21 | 7SYG|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) | ELECTRON MICROSCOPY | 4.3 | 162 |
| 22 | 4UJC|1|AC | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 261 |
| 23 | 4UJD|1|BC | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 261 |