NR_20.0_12763.16

Members (39)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	7OF0\|1\|A (rep)	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).	Electron microscopy	2.2	2021-06-09
2	6ZM6\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	Electron microscopy	2.59	2021-01-13
3	7O9M\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module	Electron microscopy	2.5	2021-06-30
4	7OF6\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).	Electron microscopy	2.6	2021-06-09
5	7OF4\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).	Electron microscopy	2.7	2021-06-09
6	6ZM5\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	Electron microscopy	2.89	2021-01-13
7	7OF7\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).	Electron microscopy	2.5	2021-06-23
8	6VMI\|1\|A	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	Electron microscopy	2.96	2020-08-05
9	6VLZ\|1\|A	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	Electron microscopy	2.97	2020-08-05
10	7OF2\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.	Electron microscopy	2.7	2021-06-02
11	7OF3\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).	Electron microscopy	2.7	2021-05-19
12	7L20\|1\|A	Large subunit ribosomal RNA	16S rRNA mitochondrial	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.	Electron microscopy	3.15	2021-05-12
13	7ODR\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	State A of the human mitoribosomal large subunit assembly intermediate	Electron microscopy	2.9	2021-06-23
14	7A5J\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs	Electron microscopy	3.1	2020-12-23
15	7OF5\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).	Electron microscopy	2.9	2021-06-09
16	7ODT\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	State C of the human mitoribosomal large subunit assembly intermediate	Electron microscopy	3.1	2021-06-23
17	7O9K\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu	Electron microscopy	3.1	2021-06-30
18	5OOL\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	Electron microscopy	3.06	2017-09-13
19	7ODS\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	State B of the human mitoribosomal large subunit assembly intermediate	Electron microscopy	3.1	2021-06-23
20	7A5H\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1	Electron microscopy	3.3	2020-12-23
21	7L08\|1\|A	Large subunit ribosomal RNA	16S RRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	Electron microscopy	3.49	2021-05-12
22	6ZSC\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with E-site tRNA	Electron microscopy	3.5	2020-09-16
23	7A5K\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	Electron microscopy	3.7	2020-12-23
24	7A5I\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	Electron microscopy	3.7	2020-12-23
25	6ZSD\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	Electron microscopy	3.7	2020-09-16
26	7OG4\|1\|XA	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with P/E-tRNA	Electron microscopy	3.8	2021-06-23
27	3J9M\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome (class 1)	Electron microscopy	3.5	2015-04-15
28	6I9R\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin	Electron microscopy	3.9	2020-07-08
29	5OOM\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	Electron microscopy	3.03	2017-09-13
30	6ZSG\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	Electron microscopy	4	2020-10-14
31	6ZSA\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	Electron microscopy	4	2020-10-21
32	6ZS9\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with ribosome recycling factor	Electron microscopy	4	2020-10-14
33	3J7Y\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the large ribosomal subunit from human mitochondria	Electron microscopy	3.4	2014-10-15
34	7A5G\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA	Electron microscopy	4.33	2020-12-23
35	6NU2\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structural insights into unique features of the human mitochondrial ribosome recycling	Electron microscopy	3.9	2019-04-17
36	7A5F\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs	Electron microscopy	4.4	2020-12-23
37	6ZSB\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA and P-site tRNA	Electron microscopy	4.5	2020-09-16
38	6NU3\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structural insights into unique features of the human mitochondrial ribosome recycling	Electron microscopy	4.4	2019-04-17
39	6ZSE\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA	Electron microscopy	5	2020-09-16

Release history

Release	3.185	3.186	3.187	3.188	3.189	3.190	3.191	3.192	3.193	3.194	3.195
Date	2021-06-30	2021-07-07	2021-07-14	2021-07-21	2021-07-28	2021-08-04	2021-08-11	2021-08-18	2021-08-25	2021-09-01	2021-09-08

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_20.0_12763.16	NR_20.0_12763.15	3.185	(37) 6ZSD\|1\|XA, 7OF3\|1\|A, 6ZSC\|1\|XA, 7OF2\|1\|A, 6ZSB\|1\|XA, 7OF0\|1\|A, 6ZSA\|1\|XA, 7ODT\|1\|A, 6ZS9\|1\|XA, 7ODS\|1\|A, 6ZM6\|1\|A, 7ODR\|1\|A, 6ZM5\|1\|A, 7L20\|1\|A, 6VMI\|1\|A, 7L08\|1\|A, 6VLZ\|1\|A, 7A5K\|1\|A3, 6NU3\|1\|A, 7A5J\|1\|A, 6NU2\|1\|A, 7A5I\|1\|A3, 7OG4\|1\|XA, 6I9R\|1\|A, 7A5H\|1\|A, 7OF7\|1\|A, 5OOM\|1\|A, 7A5G\|1\|A3, 7OF6\|1\|A, 5OOL\|1\|A, 7A5F\|1\|A3, 3J9M\|1\|A, 6ZSG\|1\|XA, 7OF5\|1\|A, 3J7Y\|1\|A, 6ZSE\|1\|XA, 7OF4\|1\|A	(2) 7O9K\|1\|A, 7O9M\|1\|A	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_20.0_12763.16	NR_20.0_12763.17	3.196	(39) 6ZSC\|1\|XA, 7OF6\|1\|A, 6I9R\|1\|A, 7O9K\|1\|A, 6ZSE\|1\|XA, 7OG4\|1\|XA, 6NU3\|1\|A, 7ODR\|1\|A, 7A5F\|1\|A3, 6VMI\|1\|A, 7ODT\|1\|A, 7A5H\|1\|A, 6ZM6\|1\|A, 7OF2\|1\|A, 3J7Y\|1\|A, 7A5J\|1\|A, 6ZSA\|1\|XA, 7OF4\|1\|A, 5OOL\|1\|A, 7L08\|1\|A, 5OOM\|1\|A, 6ZSD\|1\|XA, 6NU2\|1\|A, 6ZSG\|1\|XA, 6VLZ\|1\|A, 7A5G\|1\|A3, 6ZM5\|1\|A, 6ZS9\|1\|XA, 3J9M\|1\|A, 6ZSB\|1\|XA, 7OF5\|1\|A, 7L20\|1\|A, 7OF7\|1\|A, 7O9M\|1\|A, 7ODS\|1\|A, 7OF0\|1\|A, 7A5I\|1\|A3, 7OF3\|1\|A, 7A5K\|1\|A3	(0)	(8) 7OIB\|1\|A, 7OIC\|1\|A, 7OIA\|1\|A, 7OI9\|1\|A, 7OI8\|1\|A, 7OI7\|1\|A, 7OIE\|1\|A, 7OID\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	6NU2\|1\|A	Structural insights into unique features of the human mitochondrial ribosome recycling	ELECTRON MICROSCOPY	3.9	1472
2	6NU3\|1\|A	Structural insights into unique features of the human mitochondrial ribosome recycling	ELECTRON MICROSCOPY	4.4	1472
3	6VMI\|1\|A	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	ELECTRON MICROSCOPY	2.96	1527
4	6VLZ\|1\|A	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	ELECTRON MICROSCOPY	2.97	1527
5	7L08\|1\|A	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	ELECTRON MICROSCOPY	3.49	1527
6	7L20\|1\|A	Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.	ELECTRON MICROSCOPY	3.15	1527
7	3J7Y\|1\|A	Structure of the large ribosomal subunit from human mitochondria	ELECTRON MICROSCOPY	3.4	1473
8	3J9M\|1\|A	Structure of the human mitochondrial ribosome (class 1)	ELECTRON MICROSCOPY	3.5	1472
9	7A5F\|1\|A3	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs	ELECTRON MICROSCOPY	4.4	1503
10	7A5G\|1\|A3	Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA	ELECTRON MICROSCOPY	4.33	1503
11	7A5I\|1\|A3	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	ELECTRON MICROSCOPY	3.7	1485
12	7A5K\|1\|A3	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	ELECTRON MICROSCOPY	3.7	1503
13	7A5J\|1\|A	Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs	ELECTRON MICROSCOPY	3.1	1492
14	5OOL\|1\|A	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	ELECTRON MICROSCOPY	3.06	1441
15	7A5H\|1\|A	Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1	ELECTRON MICROSCOPY	3.3	1457
16	6ZM6\|1\|A	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	ELECTRON MICROSCOPY	2.59	1531
17	6ZM5\|1\|A	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	ELECTRON MICROSCOPY	2.89	1534
18	6ZSG\|1\|XA	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	4	1501
19	6ZSA\|1\|XA	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	ELECTRON MICROSCOPY	4	1501
20	6ZSC\|1\|XA	Human mitochondrial ribosome in complex with E-site tRNA	ELECTRON MICROSCOPY	3.5	1501
21	6ZSD\|1\|XA	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	3.7	1501
22	7OG4\|1\|XA	Human mitochondrial ribosome in complex with P/E-tRNA	ELECTRON MICROSCOPY	3.8	1498
23	6ZS9\|1\|XA	Human mitochondrial ribosome in complex with ribosome recycling factor	ELECTRON MICROSCOPY	4	1501
24	6ZSB\|1\|XA	Human mitochondrial ribosome in complex with mRNA and P-site tRNA	ELECTRON MICROSCOPY	4.5	1501
25	6ZSE\|1\|XA	Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA	ELECTRON MICROSCOPY	5	1501
26	6I9R\|1\|A	Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin	ELECTRON MICROSCOPY	3.9	1498
27	7OF6\|1\|A	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).	ELECTRON MICROSCOPY	2.6	1460
28	7OF4\|1\|A	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).	ELECTRON MICROSCOPY	2.7	1460
29	7OF2\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.	ELECTRON MICROSCOPY	2.7	1407
30	7OF5\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).	ELECTRON MICROSCOPY	2.9	1386
31	7OF7\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).	ELECTRON MICROSCOPY	2.5	1373
32	7ODT\|1\|A	State C of the human mitoribosomal large subunit assembly intermediate	ELECTRON MICROSCOPY	3.1	1451
33	5OOM\|1\|A	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	ELECTRON MICROSCOPY	3.03	1092
34	7OF0\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).	ELECTRON MICROSCOPY	2.2	1376
35	7OF3\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).	ELECTRON MICROSCOPY	2.7	1386
36	7ODR\|1\|A	State A of the human mitoribosomal large subunit assembly intermediate	ELECTRON MICROSCOPY	2.9	1417
37	7ODS\|1\|A	State B of the human mitoribosomal large subunit assembly intermediate	ELECTRON MICROSCOPY	3.1	1414
38	7O9M\|1\|A	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module	ELECTRON MICROSCOPY	2.5	1453
39	7O9K\|1\|A	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu	ELECTRON MICROSCOPY	3.1	1435

Equivalence class NR_20.0_12763.16 Obsolete

Release history

Parents

Children