RNA 3D Hub //

Equivalence class NR_20.0_12763.19 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17OF0|1|A (rep)Large subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).Electron microscopy2.22021-06-09
26ZM6|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.592021-01-13
37O9M|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleElectron microscopy2.52021-06-30
47OF6|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).Electron microscopy2.62021-06-09
57OF4|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).Electron microscopy2.72021-06-09
66ZM5|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.892021-01-13
77OF7|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).Electron microscopy2.52021-06-23
86VMI|1|ALarge subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.962020-08-05
96VLZ|1|ALarge subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.972020-08-05
107OF2|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.Electron microscopy2.72021-06-02
117OF3|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).Electron microscopy2.72021-05-19
127L20|1|ALarge subunit ribosomal RNA16S rRNA mitochondrialHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.Electron microscopy3.152021-05-12
137ODR|1|ALarge subunit ribosomal RNA16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State A of the human mitoribosomal large subunit assembly intermediateElectron microscopy2.92021-06-23
147A5J|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsElectron microscopy3.12020-12-23
157OF5|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).Electron microscopy2.92021-06-09
167ODT|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State C of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.12021-06-23
177O9K|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuElectron microscopy3.12021-06-30
185OOL|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.062017-09-13
197ODS|1|ALarge subunit ribosomal RNA16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State B of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.12021-06-23
207OIC|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4Electron microscopy3.12021-09-15
217A5H|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1Electron microscopy3.32020-12-23
227L08|1|ALarge subunit ribosomal RNA16S RRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.492021-05-12
237OIE|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BElectron microscopy3.52021-09-15
246ZSC|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.52020-09-16
257A5K|1|A3Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitoribosome in the post translocation state bound to mtEF-G1Electron microscopy3.72020-12-23
267A5I|1|A3Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitoribosome with A- P-and E-site mt-tRNAsElectron microscopy3.72020-12-23
277OID|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AElectron microscopy3.72021-09-15
286ZSD|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAElectron microscopy3.72020-09-16
297PD3|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACPElectron microscopy3.42021-11-17
307OG4|1|XALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with P/E-tRNAElectron microscopy3.82021-06-23
313J9M|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.52015-04-15
326I9R|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinElectron microscopy3.92020-07-08
335OOM|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.032017-09-13
346ZSG|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAElectron microscopy42020-10-14
356ZSA|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAElectron microscopy42020-10-21
366ZS9|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with ribosome recycling factorElectron microscopy42020-10-14
377OIA|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CElectron microscopy3.22021-09-15
383J7Y|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the large ribosomal subunit from human mitochondriaElectron microscopy3.42014-10-15
397A5G|1|A3Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAElectron microscopy4.332020-12-23
407OIB|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DElectron microscopy3.32021-09-15
417OI9|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BElectron microscopy3.32021-09-15
426NU2|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy3.92019-04-17
437A5F|1|A3Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsElectron microscopy4.42020-12-23
447OI8|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AElectron microscopy3.52021-09-15
457OI7|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2Electron microscopy3.52021-09-15
466ZSB|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA and P-site tRNAElectron microscopy4.52020-09-16
476NU3|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy4.42019-04-17
486ZSE|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAElectron microscopy52020-09-16
497OI6|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1Electron microscopy5.72021-10-13

Release history

Release3.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.219
Date2021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_12763.19NR_20.0_12763.183.205(48) 7A5H|1|A, 7A5G|1|A3, 7A5F|1|A3, 6ZSG|1|XA, 6ZSE|1|XA, 6ZSD|1|XA, 7OIE|1|A, 6ZSC|1|XA, 7OID|1|A, 6ZSB|1|XA, 7OIC|1|A, 6ZSA|1|XA, 7OIB|1|A, 6ZS9|1|XA, 7OIA|1|A, 6ZM6|1|A, 7OI9|1|A, 6ZM5|1|A, 7OI8|1|A, 6VMI|1|A, 7OI7|1|A, 6VLZ|1|A, 7OI6|1|A, 6NU3|1|A, 7OG4|1|XA, 6NU2|1|A, 7OF7|1|A, 6I9R|1|A, 7OF6|1|A, 5OOM|1|A, 7OF5|1|A, 5OOL|1|A, 7OF4|1|A, 3J9M|1|A, 7OF3|1|A, 3J7Y|1|A, 7OF2|1|A, 7OF0|1|A, 7ODT|1|A, 7ODS|1|A, 7ODR|1|A, 7O9M|1|A, 7O9K|1|A, 7L20|1|A, 7L08|1|A, 7A5K|1|A3, 7A5J|1|A, 7A5I|1|A3(1) 7PD3|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_12763.19NR_20.0_12763.203.220(49) 7OF7|1|A, 6NU2|1|A, 7A5I|1|A3, 7OF6|1|A, 6I9R|1|A, 7A5H|1|A, 7OF5|1|A, 5OOM|1|A, 7A5G|1|A3, 7OF4|1|A, 5OOL|1|A, 7A5F|1|A3, 7OF3|1|A, 3J9M|1|A, 6ZSG|1|XA, 7OF2|1|A, 7PD3|1|A, 3J7Y|1|A, 6ZSE|1|XA, 7OF0|1|A, 7OIE|1|A, 6ZSD|1|XA, 7OID|1|A, 6ZSC|1|XA, 7ODT|1|A, 7OIC|1|A, 6ZSB|1|XA, 7ODS|1|A, 7OIB|1|A, 6ZSA|1|XA, 7ODR|1|A, 7OIA|1|A, 6ZS9|1|XA, 7O9M|1|A, 7OI9|1|A, 6ZM6|1|A, 7O9K|1|A, 7OI8|1|A, 6ZM5|1|A, 7L20|1|A, 7OI7|1|A, 6VMI|1|A, 7L08|1|A, 7OI6|1|A, 6VLZ|1|A, 7A5K|1|A3, 7OG4|1|XA, 6NU3|1|A, 7A5J|1|A(0) (1) 7QH6|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16NU2|1|AStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY3.91472
26NU3|1|AStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY4.41472
36VMI|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.961527
46VLZ|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.971527
57L08|1|ACryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.491527
67L20|1|ACryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.ELECTRON MICROSCOPY3.151527
76ZSE|1|XAHuman mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY51501
86ZSB|1|XAHuman mitochondrial ribosome in complex with mRNA and P-site tRNAELECTRON MICROSCOPY4.51501
97OG4|1|XAHuman mitochondrial ribosome in complex with P/E-tRNAELECTRON MICROSCOPY3.81498
106ZSC|1|XAHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.51501
116ZSD|1|XAHuman mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.71501
126ZSA|1|XAHuman mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAELECTRON MICROSCOPY41501
136ZSG|1|XAHuman mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY41501
146ZS9|1|XAHuman mitochondrial ribosome in complex with ribosome recycling factorELECTRON MICROSCOPY41501
156I9R|1|ALarge subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinELECTRON MICROSCOPY3.91498
166ZM6|1|AHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.591531
176ZM5|1|AHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.891534
187OF6|1|AStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).ELECTRON MICROSCOPY2.61460
197OF4|1|AStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).ELECTRON MICROSCOPY2.71460
207A5J|1|AStructure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsELECTRON MICROSCOPY3.11492
215OOL|1|AStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.061441
227A5H|1|AStructure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1ELECTRON MICROSCOPY3.31457
237A5K|1|A3Structure of the human mitoribosome in the post translocation state bound to mtEF-G1ELECTRON MICROSCOPY3.71503
247A5I|1|A3Structure of the human mitoribosome with A- P-and E-site mt-tRNAsELECTRON MICROSCOPY3.71485
257A5G|1|A3Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAELECTRON MICROSCOPY4.331503
267A5F|1|A3Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsELECTRON MICROSCOPY4.41503
273J9M|1|AStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.51472
283J7Y|1|AStructure of the large ribosomal subunit from human mitochondriaELECTRON MICROSCOPY3.41473
297OIE|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BELECTRON MICROSCOPY3.51472
307OID|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AELECTRON MICROSCOPY3.71472
317OIC|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4ELECTRON MICROSCOPY3.11385
327OF7|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).ELECTRON MICROSCOPY2.51373
337OF5|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).ELECTRON MICROSCOPY2.91386
347ODT|1|AState C of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.11451
357OF2|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.ELECTRON MICROSCOPY2.71407
367OF0|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).ELECTRON MICROSCOPY2.21376
377OF3|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).ELECTRON MICROSCOPY2.71386
387ODR|1|AState A of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY2.91417
397ODS|1|AState B of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.11414
407O9M|1|AHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleELECTRON MICROSCOPY2.51453
417O9K|1|AHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuELECTRON MICROSCOPY3.11435
427PD3|1|AStructure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACPELECTRON MICROSCOPY3.41363
435OOM|1|AStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.031092
447OIA|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CELECTRON MICROSCOPY3.21092
457OIB|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DELECTRON MICROSCOPY3.31092
467OI8|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AELECTRON MICROSCOPY3.51092
477OI9|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BELECTRON MICROSCOPY3.31092
487OI7|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2ELECTRON MICROSCOPY3.51054
497OI6|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1ELECTRON MICROSCOPY5.71208
Copyright 2024 BGSU RNA group. Page generated in 1.7346 s