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Equivalence class NR_20.0_14145.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14WRT|1|V+ 4WRT|1|R (rep)Influenza virus polymerase vRNA promoter 5' end, Influenza virus polymerase vRNA promoter 3' endInfluenza B virusCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-ray diffraction2.72014-11-19
26QCW|1|V+ 6QCW|1|R+ 6QCW|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3')synthetic constructCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-ray diffraction2.882019-06-05
36QCX|1|V+ 6QCX|1|R+ 6QCX|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3')synthetic constructCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-ray diffraction3.082019-06-05
47Z43|1|VVV+ 7Z43|1|RRRRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*CP*CP*UP*GP*CP*U)-3')Influenza B virusInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-ray diffraction3.1232022-05-11
56QCV|1|V+ 6QCV|1|R+ 6QCV|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3')synthetic constructCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-ray diffraction3.242019-06-05
64WSA|1|V+ 4WSA|1|RInfluenza B vRNA promoter 5' end, Influenza B vRNA promoter 3' endInfluenza B virusCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-ray diffraction3.42014-11-19
75M3J|1|V+ 5M3J|1|RRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3')Influenza B virusInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-ray diffraction3.52016-12-21
85MSG|1|V+ 5MSG|1|RRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*U)-3')Influenza B virusInfluenza B polymerase bound to vRNA promoter and capped RNA primerX-ray diffraction3.82017-02-08
97R0E|1|V+ 7R0E|1|R+ 7R0E|1|M5' vRNA, 3' vRNA, mRNAInfluenza A virusEarly transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 positionElectron microscopy2.512022-12-28
106T0N|1|V+ 6T0N|1|R5' vRNA, 3' vRNAInfluenza B virusBat Influenza A polymerase pre-initiation complexElectron microscopy2.542020-04-15
116SZV|1|V5' vRNAInfluenza B virusBat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only)Electron microscopy2.52020-04-15
128BEK|1|V+ 8BEK|1|R+ 8BEK|1|M5' vRNA, 3' vRNA, mRNAInfluenza A virusEarly transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 positionElectron microscopy2.862022-12-28
137QTL|1|V5' vRNAInfluenza A virusInfluenza A/H7N9 polymerase elongation complexElectron microscopy2.482022-12-28
147R1F|1|V5' vRNAInfluenza B virusEarly transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106Electron microscopy2.582022-12-28
156QCS|1|V+ 6QCS|1|R5 end, 3 endInfluenza B virusInfluenza B polymerase pre-initiation complexElectron microscopy3.12019-06-05
166T0V|1|V5' vRNAInfluenza A virusBat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)Electron microscopy3.022020-04-15
176QCT|1|V5 endInfluenza B virusInfluenza B polymerase elongation complexElectron microscopy3.22019-06-05
187ZPL|1|U5' vRNAInfluenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookElectron microscopy3.122022-12-28
197ZPL|1|V5' vRNAInfluenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookElectron microscopy3.122022-12-28
206F5O|1|V+ 6F5O|1|R5' promoter vRNA, 3' promoter vRNAInfluenza B virusA mechanism for the activation of the influenza virus transcriptaseElectron microscopy9.82018-06-27

Release history

Release3.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.332
Date2022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_14145.1NR_20.0_36180.13.263(1) 6SZV|1|V(19) 7QTL|1|V, 6T0V|1|V, 6T0N|1|V+6T0N|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCT|1|V, 6QCS|1|V+6QCS|1|R, 6F5O|1|V+6F5O|1|R, 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R, 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 7ZPL|1|U, 7Z43|1|VVV+7Z43|1|RRR, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M(0)
NR_20.0_14145.1NR_20.0_45043.43.263(11) 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6T0N|1|V+6T0N|1|R, 5M3J|1|V+5M3J|1|R, 6QCS|1|V+6QCS|1|R, 4WSA|1|V+4WSA|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6F5O|1|V+6F5O|1|R, 4WRT|1|V+4WRT|1|R, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 5MSG|1|V+5MSG|1|R, 7Z43|1|VVV+7Z43|1|RRR(9) 7QTL|1|V, 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 6T0V|1|V, 7ZPL|1|U, 6SZV|1|V, 7R1F|1|V, 6QCT|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M(0)
NR_20.0_14145.1NR_20.0_56913.13.263(1) 6T0V|1|V(19) 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 7ZPL|1|U, 7Z43|1|VVV+7Z43|1|RRR, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7QTL|1|V, 6T0N|1|V+6T0N|1|R, 6SZV|1|V, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCT|1|V, 6QCS|1|V+6QCS|1|R, 6F5O|1|V+6F5O|1|R, 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R(0)
NR_20.0_14145.1NR_20.0_57831.13.263(1) 6QCT|1|V(19) 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R, 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 7ZPL|1|U, 7Z43|1|VVV+7Z43|1|RRR, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7QTL|1|V, 6T0V|1|V, 6T0N|1|V+6T0N|1|R, 6SZV|1|V, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCS|1|V+6QCS|1|R, 6F5O|1|V+6F5O|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16T0N|1|V+6T0N|1|RBat Influenza A polymerase pre-initiation complexELECTRON MICROSCOPY2.5414
27R0E|1|V+7R0E|1|R+7R0E|1|MEarly transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 positionELECTRON MICROSCOPY2.5114
38BEK|1|V+8BEK|1|R+8BEK|1|MEarly transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 positionELECTRON MICROSCOPY2.8614
44WRT|1|V+4WRT|1|RCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-RAY DIFFRACTION2.714
56QCS|1|V+6QCS|1|RInfluenza B polymerase pre-initiation complexELECTRON MICROSCOPY3.114
66F5O|1|V+6F5O|1|RA mechanism for the activation of the influenza virus transcriptaseELECTRON MICROSCOPY9.814
74WSA|1|V+4WSA|1|RCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-RAY DIFFRACTION3.414
85M3J|1|V+5M3J|1|RInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-RAY DIFFRACTION3.514
95MSG|1|V+5MSG|1|RInfluenza B polymerase bound to vRNA promoter and capped RNA primerX-RAY DIFFRACTION3.814
107Z43|1|VVV+7Z43|1|RRRInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-RAY DIFFRACTION3.12314
116QCW|1|V+6QCW|1|R+6QCW|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-RAY DIFFRACTION2.8814
126QCX|1|V+6QCX|1|R+6QCX|1|MCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-RAY DIFFRACTION3.0814
136QCV|1|V+6QCV|1|R+6QCV|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-RAY DIFFRACTION3.2414
147QTL|1|VInfluenza A/H7N9 polymerase elongation complexELECTRON MICROSCOPY2.4813
157ZPL|1|VSymmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookELECTRON MICROSCOPY3.1212
167ZPL|1|USymmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookELECTRON MICROSCOPY3.1212
176SZV|1|VBat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only)ELECTRON MICROSCOPY2.514
186T0V|1|VBat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)ELECTRON MICROSCOPY3.0214
197R1F|1|VEarly transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106ELECTRON MICROSCOPY2.5812
206QCT|1|VInfluenza B polymerase elongation complexELECTRON MICROSCOPY3.213
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