Equivalence class NR_20.0_17405.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4IOA|1|Y (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-ray diffraction | 3.2 | 2013-03-06 |
| 2 | 4IO9|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-ray diffraction | 3.2 | 2013-03-06 |
| 3 | 2ZJR|1|Y | 5S ribosomal RNA | ribosomal 5S RNA | Deinococcus radiodurans | Bacteria | RF00001 | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | X-ray diffraction | 2.91 | 2008-06-17 |
| 4 | 2ZJP|1|Z | 5S ribosomal RNA | RIBOSOMAL 5S RNA | Deinococcus radiodurans | Bacteria | RF00001 | Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans | X-ray diffraction | 3.7 | 2008-06-17 |
| 5 | 2ZJQ|1|Y | 5S ribosomal RNA | ribosomal 5S RNA | Deinococcus radiodurans | Bacteria | RF00001 | Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit | X-ray diffraction | 3.3 | 2008-06-17 |
| 6 | 3CF5|1|Z | 5S ribosomal RNA | RRNA-5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans | X-ray diffraction | 3.3 | 2008-06-17 |
| 7 | 3DLL|1|Z | 5S ribosomal RNA | rRNA-5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning | X-ray diffraction | 3.5 | 2008-09-16 |
| 8 | 4IOC|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-ray diffraction | 3.6 | 2013-03-06 |
| 9 | 3FWO|1|B | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | The large ribosomal subunit from Deinococcus radiodurans complexed with Methymycin | X-ray diffraction | 3.71 | 2010-01-19 |
| 10 | 1Y69|1|9 | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans | X-ray diffraction | 3.33 | 2005-03-01 |
| 11 | 3JQ4|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidin | X-ray diffraction | 3.52 | 2010-09-08 |
| 12 | 1XBP|1|9 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin | X-ray diffraction | 3.5 | 2005-03-01 |
| 13 | 3PIP|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-ray diffraction | 3.45 | 2011-02-23 |
| 14 | 1NWX|1|9 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 | X-ray diffraction | 3.5 | 2003-03-18 |
| 15 | 1NKW|1|9 | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans | X-ray diffraction | 3.1 | 2003-02-11 |
| 16 | 1SM1|1|9 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN | X-ray diffraction | 3.42 | 2004-08-03 |
| 17 | 1NWY|1|9 | 5S ribosomal RNA | 5S RIBOSOMAL RRNA | Deinococcus radiodurans | Bacteria | RF00001 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN | X-ray diffraction | 3.3 | 2003-03-18 |
| 18 | 3PIO|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-ray diffraction | 3.25 | 2011-02-23 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3PIO|1|Y | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-RAY DIFFRACTION | 3.25 | 120 |
| 2 | 3PIP|1|Y | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-RAY DIFFRACTION | 3.45 | 120 |
| 3 | 2ZJP|1|Z | Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans | X-RAY DIFFRACTION | 3.7 | 122 |
| 4 | 2ZJR|1|Y | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 2.91 | 122 |
| 5 | 3CF5|1|Z | Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans | X-RAY DIFFRACTION | 3.3 | 122 |
| 6 | 2ZJQ|1|Y | Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit | X-RAY DIFFRACTION | 3.3 | 122 |
| 7 | 4IO9|1|Y | Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.2 | 122 |
| 8 | 4IOC|1|Y | Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.6 | 122 |
| 9 | 4IOA|1|Y | Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.2 | 122 |
| 10 | 3DLL|1|Z | The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning | X-RAY DIFFRACTION | 3.5 | 122 |
| 11 | 3FWO|1|B | The large ribosomal subunit from Deinococcus radiodurans complexed with Methymycin | X-RAY DIFFRACTION | 3.71 | 118 |
| 12 | 3JQ4|1|B | The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidin | X-RAY DIFFRACTION | 3.52 | 118 |
| 13 | 1Y69|1|9 | RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.33 | 118 |
| 14 | 1XBP|1|9 | Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin | X-RAY DIFFRACTION | 3.5 | 118 |
| 15 | 1NKW|1|9 | Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans | X-RAY DIFFRACTION | 3.1 | 118 |
| 16 | 1NWX|1|9 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 | X-RAY DIFFRACTION | 3.5 | 118 |
| 17 | 1NWY|1|9 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN | X-RAY DIFFRACTION | 3.3 | 118 |
| 18 | 1SM1|1|9 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN | X-RAY DIFFRACTION | 3.42 | 118 |
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