Equivalence class NR_20.0_17405.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4IOA|1|Y (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-ray diffraction | 3.2 | 2013-03-06 |
| 2 | 4IO9|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-ray diffraction | 3.2 | 2013-03-06 |
| 3 | 5JVG|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin | X-ray diffraction | 3.43 | 2016-11-09 |
| 4 | 5DM6|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans | X-ray diffraction | 2.9 | 2015-11-11 |
| 5 | 4IOC|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-ray diffraction | 3.6 | 2013-03-06 |
| 6 | 5JVH|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin | X-ray diffraction | 3.58 | 2016-11-09 |
| 7 | 4U67|1|Y | 5S ribosomal RNA | 5s RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 | X-ray diffraction | 3.65 | 2015-08-05 |
| 8 | 3PIO|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-ray diffraction | 3.25 | 2011-02-23 |
| 9 | 4WFN|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycin | X-ray diffraction | 3.54 | 2015-12-23 |
| 10 | 3PIP|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-ray diffraction | 3.45 | 2011-02-23 |
| 11 | 5DM7|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A | X-ray diffraction | 3 | 2015-11-11 |
| 12 | 3DLL|1|Z | 5S ribosomal RNA | rRNA-5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning | X-ray diffraction | 3.5 | 2008-09-16 |
| 13 | 3JQ4|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidin | X-ray diffraction | 3.52 | 2010-09-08 |
| 14 | 1Y69|1|9 | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans | X-ray diffraction | 3.33 | 2005-03-01 |
| 15 | 3FWO|1|B | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | The large ribosomal subunit from Deinococcus radiodurans complexed with Methymycin | X-ray diffraction | 3.71 | 2010-01-19 |
| 16 | 2ZJR|1|Y | 5S ribosomal RNA | ribosomal 5S RNA | Deinococcus radiodurans | Bacteria | RF00001 | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | X-ray diffraction | 2.91 | 2008-06-17 |
| 17 | 3CF5|1|Z | 5S ribosomal RNA | RRNA-5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans | X-ray diffraction | 3.3 | 2008-06-17 |
| 18 | 2ZJQ|1|Y | 5S ribosomal RNA | ribosomal 5S RNA | Deinococcus radiodurans | Bacteria | RF00001 | Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit | X-ray diffraction | 3.3 | 2008-06-17 |
| 19 | 2ZJP|1|Z | 5S ribosomal RNA | RIBOSOMAL 5S RNA | Deinococcus radiodurans | Bacteria | RF00001 | Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans | X-ray diffraction | 3.7 | 2008-06-17 |
| 20 | 5DM8|1|Y | Deinococcus radiodurans R1 chromosome 1, complete sequence | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin | X-ray diffraction | 3.1 | 2016-10-05 | ||||
| 21 | 1SM1|1|9 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN | X-ray diffraction | 3.42 | 2004-08-03 |
| 22 | 1NKW|1|9 | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans | X-ray diffraction | 3.1 | 2003-02-11 |
| 23 | 1NWY|1|9 | 5S ribosomal RNA | 5S RIBOSOMAL RRNA | Deinococcus radiodurans | Bacteria | RF00001 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN | X-ray diffraction | 3.3 | 2003-03-18 |
| 24 | 1XBP|1|9 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin | X-ray diffraction | 3.5 | 2005-03-01 |
| 25 | 1NWX|1|9 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Deinococcus radiodurans | Bacteria | RF00001 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 | X-ray diffraction | 3.5 | 2003-03-18 |
Release history
| Release | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_17405.6 | NR_20.0_17405.5 | 3.0 | (24) 5DM6|1|Y, 4WFN|1|Y, 4U67|1|Y, 4IOC|1|Y, 4IOA|1|Y, 4IO9|1|Y, 3PIP|1|Y, 3PIO|1|Y, 3JQ4|1|B, 3FWO|1|B, 3DLL|1|Z, 3CF5|1|Z, 2ZJR|1|Y, 2ZJQ|1|Y, 2ZJP|1|Z, 1Y69|1|9, 1XBP|1|9, 1SM1|1|9, 1NWY|1|9, 1NWX|1|9, 1NKW|1|9, 5JVH|1|Y, 5JVG|1|Y, 5DM7|1|Y | (1) 5DM8|1|Y | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_17405.6 | NR_20.0_17405.7 | 3.151 | (24) 3CF5|1|Z, 1NWY|1|9, 4U67|1|Y, 3FWO|1|B, 1XBP|1|9, 5DM6|1|Y, 3PIO|1|Y, 2ZJP|1|Z, 5JVG|1|Y, 4IO9|1|Y, 2ZJR|1|Y, 1NWX|1|9, 4IOC|1|Y, 3DLL|1|Z, 1SM1|1|9, 4WFN|1|Y, 3JQ4|1|B, 1Y69|1|9, 5DM7|1|Y, 3PIP|1|Y, 2ZJQ|1|Y, 5JVH|1|Y, 4IOA|1|Y, 1NKW|1|9 | (1) 5DM8|1|Y | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3DLL|1|Z | The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning | X-RAY DIFFRACTION | 3.5 | 122 |
| 2 | 4IOA|1|Y | Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.2 | 122 |
| 3 | 4IOC|1|Y | Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.6 | 122 |
| 4 | 4IO9|1|Y | Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.2 | 122 |
| 5 | 2ZJQ|1|Y | Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit | X-RAY DIFFRACTION | 3.3 | 122 |
| 6 | 3CF5|1|Z | Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans | X-RAY DIFFRACTION | 3.3 | 122 |
| 7 | 2ZJR|1|Y | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 2.91 | 122 |
| 8 | 2ZJP|1|Z | Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans | X-RAY DIFFRACTION | 3.7 | 122 |
| 9 | 3PIP|1|Y | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-RAY DIFFRACTION | 3.45 | 120 |
| 10 | 3PIO|1|Y | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-RAY DIFFRACTION | 3.25 | 120 |
| 11 | 4WFN|1|Y | Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycin | X-RAY DIFFRACTION | 3.54 | 122 |
| 12 | 4U67|1|Y | Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 | X-RAY DIFFRACTION | 3.65 | 122 |
| 13 | 5JVH|1|Y | The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin | X-RAY DIFFRACTION | 3.58 | 120 |
| 14 | 5JVG|1|Y | The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin | X-RAY DIFFRACTION | 3.43 | 120 |
| 15 | 5DM8|1|Y | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin | X-RAY DIFFRACTION | 3.1 | 122 |
| 16 | 5DM6|1|Y | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans | X-RAY DIFFRACTION | 2.9 | 122 |
| 17 | 5DM7|1|Y | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A | X-RAY DIFFRACTION | 3 | 122 |
| 18 | 3FWO|1|B | The large ribosomal subunit from Deinococcus radiodurans complexed with Methymycin | X-RAY DIFFRACTION | 3.71 | 118 |
| 19 | 3JQ4|1|B | The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidin | X-RAY DIFFRACTION | 3.52 | 118 |
| 20 | 1Y69|1|9 | RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.33 | 118 |
| 21 | 1XBP|1|9 | Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin | X-RAY DIFFRACTION | 3.5 | 118 |
| 22 | 1NWX|1|9 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 | X-RAY DIFFRACTION | 3.5 | 118 |
| 23 | 1NKW|1|9 | Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans | X-RAY DIFFRACTION | 3.1 | 118 |
| 24 | 1NWY|1|9 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN | X-RAY DIFFRACTION | 3.3 | 118 |
| 25 | 1SM1|1|9 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN | X-RAY DIFFRACTION | 3.42 | 118 |