#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15TBW|1|AS (rep)5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
25TBW|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
34V88|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
44V88|1|A75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
57OSA|1|AB5S ribosomal RNA5SSaccharomyces cerevisiaeEukaryaRF00001Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
65I4L|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
76HHQ|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.12019-02-20
85MEI|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.52017-06-28
95MEI|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.52017-06-28
105OBM|1|75S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.42017-12-13
116HHQ|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.12019-02-20
125LYB|1|75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
135ON6|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.12018-02-28
145I4L|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
155ON6|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.12018-02-28
165LYB|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
175OBM|1|35S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.42017-12-13
185NDW|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
197OSM|1|AB5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
205NDW|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
215NDV|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.32017-12-13
225NDV|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.32017-12-13
235NDG|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
245NDG|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
255TGM|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.52017-01-18
265TGM|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.52017-01-18
274V7R|1|B25S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome.X-ray diffraction42014-07-09
284V7R|1|D25S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome.X-ray diffraction42014-07-09
295DAT|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31
305DGV|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.12016-12-14
315DGF|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.32016-12-14
325DAT|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31
335DGE|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.452017-01-25
345DGV|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.12016-12-14
355TGA|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
365DC3|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
375DGE|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.452017-01-25
385DC3|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
395TGA|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
405DGF|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.32016-12-14
417ZW0|1|LC5S ribosomal RNA5S ribosomal RNA (RDN5-1)Saccharomyces cerevisiae W303EukaryaRF00001FAP-80S Complex - Rotated stateElectron microscopy2.42022-10-05
427TOP|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.42022-05-25
436T4Q|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.62019-12-25
447TOO|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.72022-05-25
457MPJ|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.72022-05-11
466TB3|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.82020-04-22
476SNT|1|45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.82020-03-04
487AZY|1|F5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF00001Context-specific inhibition of eukaryotic translation by macrolide antibioticsElectron microscopy2.8772021-05-19
494U4R|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
504U3U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
516WOO|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.92020-09-23
527UG6|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922Electron microscopy2.92022-12-21
534U4R|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
544U3U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
557N8B|1|A35S ribosomal RNA5SSaccharomyces cerevisiaeEukaryaRF00001Cycloheximide bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.052022-05-11
567MPI|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Stm1 bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.052022-05-11
574U4Q|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
584U4Q|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
594U3M|1|75S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
604U52|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
614U3M|1|35S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
628BIP|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexElectron microscopy3.12023-02-08
636QIK|1|x5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.12019-06-26
647OHQ|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeElectron microscopy3.12021-11-03
654U4U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
667BT6|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)Electron microscopy3.122020-10-28
676Q8Y|1|BR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexElectron microscopy3.12019-03-13
686YLG|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)Electron microscopy32020-07-29
694U6F|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
705T62|1|B5S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexElectron microscopy3.12017-02-08
714U52|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
724U4U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
736T7T|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on poly(A) tract.Electron microscopy3.12019-12-25
746XIR|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressElectron microscopy3.22020-08-26
756RZZ|1|x5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.22019-06-26
766M62|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.Electron microscopy3.22020-08-26
777BTB|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)Electron microscopy3.222020-10-28
787RR5|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of ribosomal complex bound with Rbg1/Tma46Electron microscopy3.232021-11-10
796YLH|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Rix1-Rea1 pre-60S particle - full composite structureElectron microscopy3.12020-07-29
804U4N|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
814U6F|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
826TNU|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.12020-04-22
833JCT|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.082016-06-01
844U3N|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
854U4Z|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
864U4N|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
876T7I|1|C45S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.Electron microscopy3.22019-12-25
887B7D|1|LB5S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.32021-03-10
896RI5|1|x5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.32019-06-26
906S47|1|AB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1Electron microscopy3.282019-07-24
914U4Z|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
924U55|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
934U50|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
945M1J|1|345S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.32017-01-18
954U50|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
964U3N|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
974U4Y|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
984U4Y|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
994U51|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
1006Z6K|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesElectron microscopy3.42020-07-29
1016Z6J|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionElectron microscopy3.42020-07-29
1026QT0|1|x5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.42019-06-26
1037OH3|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeElectron microscopy3.42021-11-03
1044U55|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
1055H4P|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1Electron microscopy3.072017-01-25
1066SV4|1|YR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.32020-03-04
1076SV4|1|ZR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.32020-03-04
1084U53|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
1095APO|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.412015-12-16
1106QTZ|1|x5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.52019-06-26
1116R86|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast Vms1-60S ribosomal subunit complex (post-state)Electron microscopy3.42019-07-31
1126N8M|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitElectron microscopy3.52019-03-13
1134U51|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
1144U53|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
1156SV4|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.32020-03-04
1166N8O|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitElectron microscopy3.52019-03-13
1176N8J|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitElectron microscopy3.52019-03-13
1186R87|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)Electron microscopy3.42019-06-26
1196HD7|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of the ribosome-NatA complexElectron microscopy3.42018-12-19
1205JUP|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.52016-10-05
1216N8K|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitElectron microscopy3.62019-03-13
1226N8L|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitElectron microscopy3.62019-03-13
1234U56|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
1246R84|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)Electron microscopy3.62019-06-26
1254U56|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
1268BJQ|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexElectron microscopy3.82023-02-08
1276OIG|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Subunit joining exposes nascent pre-40S rRNA for processing and quality controlElectron microscopy3.82020-09-30
1287Z34|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Structure of pre-60S particle bound to DRG1(AFG2)Electron microscopy3.82022-09-21
1296N8N|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitElectron microscopy3.82019-03-13
1306S05|1|x5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.92019-06-26
1317NRC|1|LB5S ribosomal RNA5S rRNA (121-MER)Saccharomyces cerevisiae S288CEukaryaRF00001Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AElectron microscopy3.92021-05-05
1326GQB|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)Electron microscopy3.92018-07-11
1335MC6|1|BR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeElectron microscopy3.82017-01-18
1346T83|1|Bb5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy42019-12-25
1356T83|1|4b5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy42019-12-25
1365JUT|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy42016-10-05
1376FT6|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsElectron microscopy3.92018-03-28
1385JUO|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy42016-10-05
1395JUU|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy42016-10-05
1406GQV|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)Electron microscopy42018-07-11
1415APN|1|75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1Electron microscopy3.912015-12-16
1424U4O|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
1435JUS|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)Electron microscopy4.22016-10-05
1446XIQ|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressElectron microscopy4.22020-08-26
1455T6R|1|B5S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexElectron microscopy4.22017-02-08
1464U4O|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
1477NRD|1|LB5S ribosomal RNA5S rRNA (121-MER)Saccharomyces cerevisiae S288CEukaryaRF00001Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNAElectron microscopy4.362021-04-14
1484V8Y|1|B75S ribosomal RNA5S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy4.32014-07-09
1495GAK|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.882016-02-24
1506GQ1|1|35S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)Electron microscopy4.42018-07-11
1517OHT|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population AElectron microscopy4.72021-11-03
1526I7O|1|YR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.32019-01-16
1536I7O|1|BR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.32019-01-16
1547OF1|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeElectron microscopy3.12021-11-03
1553J6Y|1|5S5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)Electron microscopy6.12014-06-11
1563J6X|1|5S5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)Electron microscopy6.12014-06-11
1573J77|1|5S5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)Electron microscopy6.22014-08-06
1583J78|1|5S5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)Electron microscopy6.32014-08-06
1594V8Z|1|B75S ribosomal RNA5S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy6.62014-07-09
1604V8T|1|75S ribosomal RNA5S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1Electron microscopy8.12014-07-09
1614V7F|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Arx1 pre-60S particle.Electron microscopy8.72014-07-09
1625FL8|1|z5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52015-12-02
1635JCS|1|z5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52016-11-16
1644V6I|1|DC5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeElectron microscopy8.82014-07-09

Release history

Release3.269
Date2023-02-08

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V7F|1|3Arx1 pre-60S particle.ELECTRON MICROSCOPY8.7121
24V6I|1|DCLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.8118
34V7R|1|D2Yeast 80S ribosome.X-RAY DIFFRACTION4121
44V7R|1|B2Yeast 80S ribosome.X-RAY DIFFRACTION4121
55JCS|1|zCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.5121
65FL8|1|zCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.5121
76HD7|1|3Cryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.4121
85GAK|1|3Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.88121
95JUO|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY4121
105JUS|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.2121
115JUT|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY4121
125JUU|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY4121
135JUP|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.5121
147OSM|1|ABIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION3121
157OSA|1|ABPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION3121
165NDV|1|7Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
175NDW|1|7Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
185NDG|1|7Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
194V8T|1|7Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1ELECTRON MICROSCOPY8.1121
204V8Z|1|B7Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.6121
214V8Y|1|B7Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.3121
224V88|1|A7The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
234U3U|1|7Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
244U4R|1|7Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
254U3M|1|7Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
264U4Y|1|7Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
274U4Z|1|7Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
284U3N|1|7Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
294U55|1|7Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
304U56|1|7Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
314U50|1|7Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
324U51|1|7Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
334U53|1|7Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
344U4U|1|7Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
354U4Q|1|7Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
364U4N|1|7Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
375I4L|1|7Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
385LYB|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.25121
395TGA|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.3121
405DC3|1|7Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
415DGE|1|7Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.45121
425DGF|1|7Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.3121
435DGV|1|7Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.1121
444U6F|1|7Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
455DAT|1|7Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.15121
464U52|1|7Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
475TGM|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.5121
484U4O|1|7Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
495MEI|1|ASCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.5121
505ON6|1|ASCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.1121
516HHQ|1|ASCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
525TBW|1|ASCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
534U4O|1|3Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
545TGM|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.5121
555DGF|1|3Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.3121
565DGE|1|3Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.45121
575DC3|1|3Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
585DGV|1|3Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.1121
595LYB|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.25121
605TGA|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.3121
615MEI|1|3Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.5121
625I4L|1|3Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
636HHQ|1|3Crystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
645TBW|1|3Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
654U4Q|1|3Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
664U4U|1|3Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
674U3M|1|3Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
684U3U|1|3Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
694U4R|1|3Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
704V88|1|A3The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
714U3N|1|3Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
724U6F|1|3Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
734U4Z|1|3Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
744U4N|1|3Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
754U4Y|1|3Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
764U53|1|3Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
774U50|1|3Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
784U52|1|3Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
794U55|1|3Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
804U51|1|3Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
815ON6|1|3Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.1121
825DAT|1|3Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.15121
834U56|1|3Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
845NDW|1|3Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
855NDG|1|3Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
865NDV|1|3Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
876WOO|1|7CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.9121
886Q8Y|1|BRCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.1121
897AZY|1|FContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.877121
907MPI|1|A3Stm1 bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.05121
917N8B|1|A3Cycloheximide bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.05121
927MPJ|1|A3Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.7120
936S47|1|ABSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.28121
946TB3|1|BRyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.8121
956T4Q|1|C4Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.6121
966SNT|1|4Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.8121
976T7T|1|C4Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.1121
986T7I|1|C4Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.2121
998BIP|1|C4Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexELECTRON MICROSCOPY3.1121
1008BJQ|1|C4Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexELECTRON MICROSCOPY3.8121
1017ZW0|1|LCFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.4121
1027TOO|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.7121
1037TOP|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.4121
1045APO|1|7Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.41121
1055APN|1|7Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.91121
1066Z6J|1|C4Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.4121
1076Z6K|1|C4Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.4121
1087B7D|1|LBYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.3121
1097NRC|1|LBStructure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.9121
1106TNU|1|BRYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.1121
1117NRD|1|LBStructure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY4.36121
1126T83|1|4bStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY4121
1136SV4|1|BRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
1146I7O|1|BRThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.3121
1156T83|1|BbStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY4121
1166I7O|1|YRThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.3121
1176SV4|1|ZRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
1186SV4|1|YRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
1196R87|1|3Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.4121
1206R84|1|3Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)ELECTRON MICROSCOPY3.6121
1216R86|1|3Yeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.4121
1225MC6|1|BRCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.8121
1236RI5|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.3121
1246QTZ|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.5121
1257RR5|1|C4Structure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.23121
1263JCT|1|3Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.08121
1275M1J|1|34Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.3121
1286XIR|1|3Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.2121
1296QT0|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.4121
1305OBM|1|7Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.4121
1315OBM|1|3Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.4121
1326RZZ|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.2121
1336QIK|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.1121
1346S05|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.9121
1356GQ1|1|3Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)ELECTRON MICROSCOPY4.4121
1366GQB|1|3Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.9121
1376GQV|1|3Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY4121
1385H4P|1|3Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.07121
1396N8J|1|2Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
1406N8O|1|BCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
1416N8N|1|BCryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitELECTRON MICROSCOPY3.8121
1426N8M|1|BCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
1436N8K|1|2Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.6121
1446N8L|1|2Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.6121
1455T6R|1|BNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexELECTRON MICROSCOPY4.2121
1465T62|1|BNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.1121
1473J78|1|5SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.3121
1483J77|1|5SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.2121
1493J6Y|1|5SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.1121
1503J6X|1|5SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.1121
1516OIG|1|7Subunit joining exposes nascent pre-40S rRNA for processing and quality controlELECTRON MICROSCOPY3.8121
1526FT6|1|3Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsELECTRON MICROSCOPY3.9121
1537UG6|1|3Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922ELECTRON MICROSCOPY2.9121
1547BTB|1|3Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.22121
1557Z34|1|2Structure of pre-60S particle bound to DRG1(AFG2)ELECTRON MICROSCOPY3.8121
1567OF1|1|3Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeELECTRON MICROSCOPY3.143
1576YLH|1|3Rix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.1117
1586YLG|1|3Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY3117
1597BT6|1|3Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.12121
1607OH3|1|3Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeELECTRON MICROSCOPY3.4121
1617OHQ|1|3Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.1121
1627OHT|1|3Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population AELECTRON MICROSCOPY4.7114
1636M62|1|3Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.2121
1646XIQ|1|3Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.2121
Copyright 2024 BGSU RNA group. Page generated in 6.9309 s