BGSU RNA Site //

Equivalence class NR_20.0_20829.4 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16EXN|1|2+ 6EXN|1|6 (rep)U2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, Intron lariat: UBC4 RNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.72018-01-17
25LJ3|1|Z+ 5LJ3|1|VU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Structure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.82016-08-03
35MQ0|1|2+ 5MQ0|1|6U2 splicesomal small nuclear RNA + U6 spliceosomal RNAS.cerevisiae chromosome II reading frame ORF YBR230c, Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00004 + RF00026Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.172017-01-18
45NRL|1|2+ 5NRL|1|4+ 5NRL|1|6U2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNAU2 snRNA, U4 snRNA, U6 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00004 + RF00015 + RF00026Structure of a pre-catalytic spliceosomeELECTRON MICROSCOPY7.22017-05-31
55LJ5|1|Z+ 5LJ5|1|VU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Overall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY102016-08-31

Release history

Release3.9
Date2018-02-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_20829.4NR_20.0_20829.33.9(4) 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5MQ0|1|2+5MQ0|1|6, 5LJ5|1|Z+5LJ5|1|V, 5LJ3|1|Z+5LJ3|1|V(1) 6EXN|1|2+6EXN|1|6(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_20829.4NR_20.0_20829.53.10(5) 6EXN|1|2+6EXN|1|6, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5MQ0|1|2+5MQ0|1|6, 5LJ5|1|Z+5LJ5|1|V, 5LJ3|1|Z+5LJ3|1|V(0) (1) 6BK8|1|2+6BK8|1|6+6BK8|1|i

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15NRL|1|2+5NRL|1|4+5NRL|1|6Structure of a pre-catalytic spliceosomeELECTRON MICROSCOPY7.2152
25LJ5|1|Z+5LJ5|1|VOverall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY10171
35LJ3|1|Z+5LJ3|1|VStructure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8171
45MQ0|1|2+5MQ0|1|6Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.17155
56EXN|1|2+6EXN|1|6Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7136