Equivalence class NR_20.0_20829.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6BK8|1|2+ 6BK8|1|6+ 6BK8|1|i (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, RNA (59-MER) | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | S. cerevisiae spliceosomal post-catalytic P complex | Electron microscopy | 3.3 | 2018-02-21 |
| 2 | 6EXN|1|2+ 6EXN|1|6 | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, Intron lariat: UBC4 RNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Post-catalytic P complex spliceosome with 3' splice site docked | Electron microscopy | 3.7 | 2018-01-17 |
| 3 | 5ZWM|1|H+ 5ZWM|1|I+ 5ZWM|1|F | U2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNA | U2 snRNA, U4 snRNA, U6 snRNA, Pre-mRNA-BPS | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00015 + RF00026 | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | Electron microscopy | 3.4 | 2018-08-29 |
| 4 | 5LJ3|1|Z+ 5LJ3|1|V | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
| 5 | 5MQ0|1|2+ 5MQ0|1|6 | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | S.cerevisiae chromosome II reading frame ORF YBR230c, Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, Yeast UBC4 gene for ubiquitin-conjugating enzyme | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 4.17 | 2017-01-18 |
| 6 | 5ZWO|1|H+ 5ZWO|1|I+ 5ZWO|1|F | U2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNA | U2 snRNA, U4 snRNA, U6 snRNA, Pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00015 + RF00026 | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | Electron microscopy | 3.9 | 2018-08-29 |
| 7 | 5NRL|1|2+ 5NRL|1|4+ 5NRL|1|6 | U2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNA | U2 snRNA, U4 snRNA, U6 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzyme | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00015 + RF00026 | Structure of a pre-catalytic spliceosome | Electron microscopy | 7.2 | 2017-05-31 |
| 8 | 5LJ5|1|Z+ 5LJ5|1|V | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Overall structure of the yeast spliceosome immediately after branching. | Electron microscopy | 10 | 2016-08-31 |
Release history
| Release | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_20829.6 | NR_20.0_20829.5 | 3.37 | (6) 6EXN|1|2+6EXN|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5MQ0|1|2+5MQ0|1|6, 5LJ5|1|Z+5LJ5|1|V, 5LJ3|1|Z+5LJ3|1|V | (2) 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_20829.6 | NR_20.0_20829.7 | 3.71 | (8) 5LJ5|1|Z+5LJ5|1|V, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 5LJ3|1|Z+5LJ3|1|V, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 6EXN|1|2+6EXN|1|6, 5MQ0|1|2+5MQ0|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i | (0) | (4) 6J6G|1|L+6J6G|1|E, 6J6Q|1|L+6J6Q|1|E, 6J6N|1|L+6J6N|1|E, 6J6H|1|L+6J6H|1|E |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6EXN|1|2+6EXN|1|6 | Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 136 |
| 2 | 6BK8|1|2+6BK8|1|6+6BK8|1|i | S. cerevisiae spliceosomal post-catalytic P complex | ELECTRON MICROSCOPY | 3.3 | 135 |
| 3 | 5MQ0|1|2+5MQ0|1|6 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 4.17 | 155 |
| 4 | 5LJ3|1|Z+5LJ3|1|V | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 171 |
| 5 | 5LJ5|1|Z+5LJ5|1|V | Overall structure of the yeast spliceosome immediately after branching. | ELECTRON MICROSCOPY | 10 | 171 |
| 6 | 5NRL|1|2+5NRL|1|4+5NRL|1|6 | Structure of a pre-catalytic spliceosome | ELECTRON MICROSCOPY | 7.2 | 152 |
| 7 | 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | ELECTRON MICROSCOPY | 3.9 | 150 |
| 8 | 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | ELECTRON MICROSCOPY | 3.4 | 206 |