#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16D30|1|C (rep)RNA (5'-R(UP*U)-3')synthetic constructStructure of human Usb1 with uridine-uridine, inactive H208Q mutantX-ray diffraction1.1722018-09-05
23ER9|1|D5'-R(UP*U)-3'Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATPX-ray diffraction2.0622009-06-16
35KAL|1|YRNA (5'-R(*UP*U)-3')Trypanosoma bruceiTerminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpUX-ray diffraction2.7522016-10-26
44NIA|1|3RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
55KAL|1|ZRNA (5'-R(*UP*U)-3')Trypanosoma bruceiTerminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpUX-ray diffraction2.7522016-10-26
64NIA|1|7RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
74NIA|1|4RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
85NEW|1|CRNA (5'-R(P*UP*U)-3')Escherichia coliRNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimerX-ray diffraction2.5122017-10-04
94NIA|1|vRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
104NIA|1|uRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
114NIA|1|6RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
124OQ9|1|7RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
134NIA|1|xRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
144NIA|1|1RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
154OQ9|1|4RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
164NIA|1|8RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
174OQ9|1|8RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
184OQ9|1|tRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
194OQ9|1|yRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
204NIA|1|5RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
214OQ9|1|xRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
222VRT|1|E5'-R(*UP*UP)-3'Escherichia coliCrystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic DomainX-ray diffraction3.522008-07-22
234NIA|1|wRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
244NIA|1|tRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
254OQ9|1|6RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
264OQ8|1|DRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraintsX-ray diffraction1.4522014-09-10
274NIA|1|zRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
284OQ9|1|wRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
294OQ9|1|5RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
304NIA|1|yRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
314NIA|1|2RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.8222014-09-10
322VRT|1|F5'-R(*UP*UP)-3'Escherichia coliCrystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic DomainX-ray diffraction3.522008-07-22
334OQ9|1|uRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
344OQ9|1|zRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
354OQ9|1|2RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
364OQ9|1|vRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
374OQ9|1|3RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10
381DDL|1|ERNA (5'-R(P*UP*U)-3')DESMODIUM YELLOW MOTTLE TYMOVIRUSX-ray diffraction2.722000-10-30
394OQ9|1|1RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.4522014-09-10

Release history

Release3.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.88
Date2018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-23

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
14OQ9|1|2Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
24NIA|1|tSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
31DDL|1|EDESMODIUM YELLOW MOTTLE TYMOVIRUSX-RAY DIFFRACTION2.72
44NIA|1|7Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
54NIA|1|8Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
64NIA|1|ySatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
74OQ9|1|8Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
84NIA|1|uSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
94OQ9|1|7Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
104OQ9|1|ySatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
114OQ9|1|uSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
123ER9|1|DCrystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATPX-RAY DIFFRACTION2.062
134OQ9|1|6Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
144NIA|1|6Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
154NIA|1|5Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
162VRT|1|FCrystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic DomainX-RAY DIFFRACTION3.52
172VRT|1|ECrystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic DomainX-RAY DIFFRACTION3.52
184OQ9|1|1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
194OQ9|1|zSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
204OQ9|1|4Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
214NIA|1|zSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
224NIA|1|1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
234OQ9|1|5Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
244NIA|1|4Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
254OQ9|1|wSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
264NIA|1|wSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
274OQ8|1|DSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraintsX-RAY DIFFRACTION1.452
284NIA|1|xSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
294OQ9|1|tSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
305KAL|1|YTerminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpUX-RAY DIFFRACTION2.752
315KAL|1|ZTerminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpUX-RAY DIFFRACTION2.752
326D30|1|CStructure of human Usb1 with uridine-uridine, inactive H208Q mutantX-RAY DIFFRACTION1.172
334NIA|1|vSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
344OQ9|1|xSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
355NEW|1|CRNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimerX-RAY DIFFRACTION2.512
364NIA|1|2Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
374OQ9|1|vSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
384NIA|1|3Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
394OQ9|1|3Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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