#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18GNA|1|C+ 8GNA|1|J (rep)RNA (32-MER), RNA (5'-R(P*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3')Candidatus Scalindua brodaeStructure of the SbCas7-11-crRNA-NTR complexElectron microscopy2.82023-01-18
28D9G|1|C+ 8D9G|1|DRNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*CP*GP*AP*U)-3')Candidatus Scalindua brodaegRAMP-TPR-CHAT Non match PFS target RNA(Craspase)Electron microscopy2.572023-06-14
37Y8T|1|DRNA (37-MER)Candidatus Scalindua brodaeStructure of Cas7-11-crRNA in complex with TPR-CHATElectron microscopy2.92023-06-28
47X8A|1|CRNA (33-MER)Candidatus Scalindua brodaeCryo-EM structure of a bacterial protein complexElectron microscopy2.82022-11-16
57XC7|1|C+ 7XC7|1|JRNA (33-MER), RNA (46-mer)Candidatus Scalindua brodaeCryo-EM structure of a bacterial protein complexElectron microscopy3.12022-11-16
67Y8Y|1|D+ 7Y8Y|1|ERNA (37-MER), RNA (5'-R(P*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*C)-3')Candidatus Scalindua brodaeStructure of Cas7-11-crRNA-tgRNA in complex with TPR-CHATElectron microscopy32023-06-28
78D9F|1|CRNA (33-MER)Candidatus Scalindua brodaegRAMP-TPR-CHAT (Craspase)Electron microscopy2.712023-06-14
87X7A|1|CRNA (33-MER)Candidatus Scalindua brodaeCryo-EM structure of SbCas7-11 in complex with crRNA and target RNAElectron microscopy3.22022-11-16
98GU6|1|C+ 8GU6|1|JRNA (33-MER), RNA (5'-R(P*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3')Candidatus Scalindua brodaeStructure of the SbCas7-11-crRNA-NTR-Csx29 complexElectron microscopy3.12023-01-18
107X7R|1|C+ 7X7R|1|JRNA (36-MER), RNA (5'-R(P*AP*GP*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*G)-3')Candidatus Scalindua brodaeCryo-EM structure of a bacterial proteinElectron microscopy3.52022-11-16
118D9H|1|C+ 8D9H|1|DRNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3')Candidatus Scalindua brodaegRAMP-TPR-CHAT match PFS target RNA(Craspase)Electron microscopy3.62023-06-14
128D8N|1|C+ 8D8N|1|DRNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*CP*A)-3')Candidatus Scalindua brodaegRAMP non-match PFS target RNAElectron microscopy3.62022-08-31
138D9E|1|C+ 8D9E|1|DRNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*UP*A)-3')Candidatus Scalindua brodaegRAMP-match PFS targetElectron microscopy3.762023-06-14
148D9I|1|C+ 8D9I|1|DRNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*A)-3')Candidatus Scalindua brodaegRAMP non-matching PFS-with MgElectron microscopy3.622023-06-14

Release history

Release3.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.337
Date2023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-29

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17X7R|1|C+7X7R|1|JCryo-EM structure of a bacterial proteinELECTRON MICROSCOPY3.536
27X7A|1|CCryo-EM structure of SbCas7-11 in complex with crRNA and target RNAELECTRON MICROSCOPY3.233
37X8A|1|CCryo-EM structure of a bacterial protein complexELECTRON MICROSCOPY2.833
48GNA|1|C+8GNA|1|JStructure of the SbCas7-11-crRNA-NTR complexELECTRON MICROSCOPY2.832
58GU6|1|C+8GU6|1|JStructure of the SbCas7-11-crRNA-NTR-Csx29 complexELECTRON MICROSCOPY3.133
67XC7|1|C+7XC7|1|JCryo-EM structure of a bacterial protein complexELECTRON MICROSCOPY3.131
78D9G|1|C+8D9G|1|DgRAMP-TPR-CHAT Non match PFS target RNA(Craspase)ELECTRON MICROSCOPY2.5736
88D9I|1|C+8D9I|1|DgRAMP non-matching PFS-with MgELECTRON MICROSCOPY3.6235
98D8N|1|C+8D8N|1|DgRAMP non-match PFS target RNAELECTRON MICROSCOPY3.635
108D9H|1|C+8D9H|1|DgRAMP-TPR-CHAT match PFS target RNA(Craspase)ELECTRON MICROSCOPY3.636
118D9E|1|C+8D9E|1|DgRAMP-match PFS targetELECTRON MICROSCOPY3.7636
128D9F|1|CgRAMP-TPR-CHAT (Craspase)ELECTRON MICROSCOPY2.7133
137Y8Y|1|D+7Y8Y|1|EStructure of Cas7-11-crRNA-tgRNA in complex with TPR-CHATELECTRON MICROSCOPY337
147Y8T|1|DStructure of Cas7-11-crRNA in complex with TPR-CHATELECTRON MICROSCOPY2.937
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