BGSU RNA Site //

Equivalence class NR_20.0_27949.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
11I5L|1|Y (rep)5'-R(*UP*UP*U)-3'CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-ray diffraction2.752001-08-28
21MVR|1|1mRNA, triplet codon (A-site)Escherichia coliBacteriaDecoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeElectron microscopy12.82003-04-01
35MQ0|1|33'-EXON OF UBC4 PRE-MRNA, BOUND BY PRP22 HELICASESaccharomyces cerevisiaeEukaryaStructure of a spliceosome remodeled for exon ligationElectron microscopy4.172017-01-18
44V68|1|A0MRNA CODONT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.Electron microscopy6.42014-07-09
55IP2|1|DRNA (5'-D(P*UP*UP*U)-3')synthetic constructSyntheticTomato spotted wilt tospovirus nucleocapsid protein-ssRNA complexX-ray diffraction3.32017-03-22
65IP2|1|FRNA (5'-D(P*UP*UP*U)-3')synthetic constructSyntheticTomato spotted wilt tospovirus nucleocapsid protein-ssRNA complexX-ray diffraction3.32017-03-22
71I5L|1|U5'-R(*UP*UP*U)-3'CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-ray diffraction2.752001-08-28
84DR7|1|b5'-R(P*UP*UP*U)-3'Thermus thermophilusBacteriaCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-ray diffraction3.752012-11-14
94DR6|1|b5'-R(*UP*UP*U)-3'Thermus thermophilusBacteriaCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin boundX-ray diffraction3.32012-11-14

Release history

Release2.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.158
Date2017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_27949.4NR_20.0_27949.32.120(7) 5MQ0|1|3, 4V68|1|A0, 4DR7|1|b, 4DR6|1|b, 1MVR|1|1, 1I5L|1|Y, 1I5L|1|U(2) 5IP2|1|F, 5IP2|1|D(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_27949.4NR_20.0_27949.53.0(7) 4DR7|1|b, 1I5L|1|U, 4V68|1|A0, 1I5L|1|Y, 5MQ0|1|3, 1MVR|1|1, 4DR6|1|b(2) 5IP2|1|D, 5IP2|1|F(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14DR6|1|bCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin boundX-RAY DIFFRACTION3.32
24DR7|1|bCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-RAY DIFFRACTION3.753
34V68|1|A0T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.43
45IP2|1|DTomato spotted wilt tospovirus nucleocapsid protein-ssRNA complexX-RAY DIFFRACTION3.33
55IP2|1|FTomato spotted wilt tospovirus nucleocapsid protein-ssRNA complexX-RAY DIFFRACTION3.33
65MQ0|1|3Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.173
71I5L|1|UCRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.753
81I5L|1|YCRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.753
91MVR|1|1Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeELECTRON MICROSCOPY12.83