#IFECompound(s)RNA source organismTitleMethodResolutionDate
14DR7|1|b (rep)5'-R(P*UP*UP*U)-3'Thermus thermophilusCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-RAY DIFFRACTION3.752012-11-14
21I5L|1|Y5'-R(*UP*UP*U)-3'CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.752001-08-28
31I5L|1|U5'-R(*UP*UP*U)-3'CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.752001-08-28
44DR6|1|b5'-R(*UP*UP*U)-3'Thermus thermophilusCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin boundX-RAY DIFFRACTION3.32012-11-14
55MQ0|1|33'-EXON OF UBC4 PRE-MRNA, BOUND BY PRP22 HELICASESaccharomyces cerevisiaeStructure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.172017-01-18
64V68|1|A0MRNA CODONT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.42014-07-09
71MVR|1|1mRNA, triplet codon (A-site)Escherichia coliDecoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeELECTRON MICROSCOPY12.82003-04-01

Release history

Release3.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.57
Date2017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_27949.5NR_20.0_27949.43.0(7) 1I5L|1|U, 5MQ0|1|3, 4DR6|1|b, 1I5L|1|Y, 4DR7|1|b, 1MVR|1|1, 4V68|1|A0(0) (2) 5IP2|1|D, 5IP2|1|F

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_27949.5NR_20.0_27949.63.58(7) 4DR7|1|b, 4DR6|1|b, 1MVR|1|1, 1I5L|1|Y, 1I5L|1|U, 5MQ0|1|3, 4V68|1|A0(0) (1) 6I2N|1|U

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11MVR|1|1Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeELECTRON MICROSCOPY12.83
25MQ0|1|3Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.173
31I5L|1|YCRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.753
41I5L|1|UCRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.753
54DR6|1|bCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin boundX-RAY DIFFRACTION3.32
64DR7|1|bCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-RAY DIFFRACTION3.753
74V68|1|A0T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.43