Equivalence class NR_20.0_30457.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5GAN|1|U (rep) | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | Electron microscopy | 3.7 | 2016-01-27 |
| 2 | 5LJ3|1|U | U5 spliceosomal RNA | U5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
| 3 | 5LJ5|1|U | U5 spliceosomal RNA | U5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Overall structure of the yeast spliceosome immediately after branching. | Electron microscopy | 10 | 2016-08-31 |
| 4 | 5GAM|1|U | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.7 | 2016-02-03 |
| 5 | 5GMK|1|D | U5 spliceosomal RNA | U5 snRNA, 5'-Exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | Electron microscopy | 3.4 | 2016-08-17 |
| 6 | 3JCM|1|F | U5 spliceosomal RNA | SNR7-L snRNA, SNR6 snRNA, pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.8 | 2016-02-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_30457.1 | NR_all_62883.1 | 2.91 | (1) 3JCM|1|F | (5) 5LJ5|1|U, 5LJ3|1|U, 5GMK|1|D, 5GAN|1|U, 5GAM|1|U | (0) |
| NR_20.0_30457.1 | NR_all_65861.1 | 2.91 | (2) 5GAN|1|U, 5GAM|1|U | (4) 5LJ5|1|U, 5LJ3|1|U, 5GMK|1|D, 3JCM|1|F | (0) |
| NR_20.0_30457.1 | NR_all_95031.1 | 2.91 | (2) 5LJ3|1|U, 5GMK|1|D | (4) 5LJ5|1|U, 5GAN|1|U, 5GAM|1|U, 3JCM|1|F | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5GMK|1|D | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | ELECTRON MICROSCOPY | 3.4 | 117 |
| 2 | 5LJ3|1|U | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 141 |
| 3 | 5LJ5|1|U | Overall structure of the yeast spliceosome immediately after branching. | ELECTRON MICROSCOPY | 10 | 141 |
| 4 | 5GAN|1|U | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | ELECTRON MICROSCOPY | 3.7 | 141 |
| 5 | 5GAM|1|U | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.7 | 141 |
| 6 | 3JCM|1|F | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.8 | 113 |