BGSU RNA Site //

Equivalence class NR_20.0_30457.2 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
15GAN|1|U (rep)U5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromELECTRON MICROSCOPY3.72016-01-27
25LJ3|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Structure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.82016-08-03
35LJ5|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Overall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY102016-08-31
45GAM|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.72016-02-03
55GMK|1|DU5 spliceosomal RNAU5 snRNA, 5'-ExonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.42016-08-17
65LQW|1|5U5 spliceosomal RNAU5 snRNA, actin pre-mRNASaccharomyces cerevisiaeEukaryaRF00020yeast activated spliceosomeELECTRON MICROSCOPY5.82016-10-05
73JCM|1|FU5 spliceosomal RNASNR7-L snRNA, SNR6 snRNA, pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.82016-02-24

Release history

Release2.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.110
Date2016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_30457.2NR_20.0_30457.12.96(6) 5LJ5|1|U, 5LJ3|1|U, 5GMK|1|D, 5GAN|1|U, 5GAM|1|U, 3JCM|1|F(1) 5LQW|1|5(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_30457.2NR_20.0_30457.32.111(7) 5GMK|1|D, 5GAN|1|U, 5GAM|1|U, 3JCM|1|F, 5LQW|1|5, 5LJ5|1|U, 5LJ3|1|U(0) (2) 5MQ0|1|5, 5MPS|1|5

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15GMK|1|DCryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4117
25LJ5|1|UOverall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY10141
35LJ3|1|UStructure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8141
45LQW|1|5yeast activated spliceosomeELECTRON MICROSCOPY5.8141
55GAN|1|UThe overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromELECTRON MICROSCOPY3.7141
65GAM|1|UFoot region of the yeast spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.7141
73JCM|1|FCryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.8113