BGSU RNA Site //

Equivalence class NR_20.0_30944.3 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
11U6B|1|B (rep)197-MER, 5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*GP*AP*CP*GP *GP*CP*C)-3', 5'-R(*CP*AP*(5MU))-3'CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONSX-RAY DIFFRACTION3.12004-08-10
23BO2|1|BGroup I intron P9, RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*G)-3'), RNA (5'-R(*AP*CP*GP*GP*CP*C)-3'), RNA (5'-R(*CP*AP*U)-3')synthetic constructSyntheticA relaxed active site following exon ligation by a group I intronX-RAY DIFFRACTION3.312008-04-01
33BO3|1|BGroup I intron P9, RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*G)-3'), RNA (5'-R(*CP*AP*UP*AP*CP*GP*GP*CP*C)-3')synthetic constructSyntheticA relaxed active site following exon ligation by a group I intronX-RAY DIFFRACTION3.42008-04-01
41ZZN|1|B197-MER, 5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*GP*AP*CP*GP*GP*CP*C)-3', 5'-R(*CP*AP*(5MU))-3'Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands.X-RAY DIFFRACTION3.372005-08-30
53BO4|1|BGroup I intron P9synthetic constructSyntheticA relaxed active site following exon ligation by a group I intronX-RAY DIFFRACTION3.332008-04-01
63IIN|1|BGroup I intronPlasticity of the kink turn structural motifX-RAY DIFFRACTION4.182010-03-09

Release history

Release3.51
Date2018-12-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_30944.3NR_20.0_30944.23.51(4) 3BO3|1|B, 3BO2|1|B, 1ZZN|1|B, 1U6B|1|B(2) 3IIN|1|B, 3BO4|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_30944.3NR_20.0_30944.43.52(4) 3BO3|1|B, 1U6B|1|B, 1ZZN|1|B, 3BO2|1|B(2) 3IIN|1|B, 3BO4|1|B(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13BO4|1|BA relaxed active site following exon ligation by a group I intronX-RAY DIFFRACTION3.33195
23BO2|1|BA relaxed active site following exon ligation by a group I intronX-RAY DIFFRACTION3.31195
31U6B|1|BCRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONSX-RAY DIFFRACTION3.1195
43IIN|1|BPlasticity of the kink turn structural motifX-RAY DIFFRACTION4.18195
53BO3|1|BA relaxed active site following exon ligation by a group I intronX-RAY DIFFRACTION3.4195
61ZZN|1|BCrystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands.X-RAY DIFFRACTION3.37195