Equivalence class NR_20.0_31819.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1QTQ|1|B (rep) | Transfer RNA | RNA (TRNA GLN II ) | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG | X-ray diffraction | 2.25 | 74 | 1998-05-27 |
| 2 | 4JXX|1|B | RNA (71-MER) | Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditions | X-ray diffraction | 2.3 | 71 | 2013-05-01 | ||||
| 3 | 1ZJW|1|B | Glutaminyl-tRNA | Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA | X-ray diffraction | 2.5 | 74 | 2005-06-07 | ||||
| 4 | 4V7M|1|AW | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 74 | 2014-07-09 |
| 5 | 4V7M|1|CW | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 74 | 2014-07-09 |
| 6 | 4V7L|1|AW | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 75 | 2014-07-09 |
| 7 | 4V7L|1|CW | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 75 | 2014-07-09 |
| 8 | 1EUY|1|B | GLUTAMINYL TRNA | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR | X-ray diffraction | 2.6 | 73 | 2000-06-04 | ||||
| 9 | 4V7L|1|AY | Transfer RNA | tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 75 | 2014-07-09 |
| 10 | 4V7L|1|CY | Transfer RNA | tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 75 | 2014-07-09 |
| 11 | 1EUQ|1|B | GLUTAMINYL TRNA | CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR | X-ray diffraction | 3.1 | 72 | 2000-06-04 | ||||
| 12 | 1QRS|1|B | Transfer RNA | TRNAGLN2 | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-ray diffraction | 2.6 | 74 | 1996-12-07 |
| 13 | 1QRT|1|B | Transfer RNA | TRNAGLN2 | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-ray diffraction | 2.7 | 74 | 1996-12-07 |
| 14 | 1QRU|1|B | Transfer RNA | TRNAGLN2 | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-ray diffraction | 3 | 74 | 1996-12-07 |
| 15 | 1GTR|1|B | RNA (74-MER) | STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE | X-ray diffraction | 2.5 | 74 | 1995-02-07 | ||||
| 16 | 2RD2|1|B | Glutamine tRNA | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE | X-ray diffraction | 2.6 | 74 | 2008-01-15 | ||||
| 17 | 1GTS|1|B | Transfer RNA | TRNAGLN | Escherichia coli | Bacteria | RF00005 | STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE | X-ray diffraction | 2.8 | 74 | 1995-02-07 |
| 18 | 5NWY|1|M | Transfer RNA | Gln-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | Electron microscopy | 2.9 | 75 | 2017-07-19 |
| 19 | 2RE8|1|B | Glutamine tRNA | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE | X-ray diffraction | 2.6 | 74 | 2008-01-15 | ||||
| 20 | 1GSG|1|T | TRNAGLN | Structure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolution | X-ray diffraction | 2.8 | 75 | 1992-02-24 | ||||
| 21 | 1O0C|1|B | Glutaminyl tRNA | CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-ray diffraction | 2.7 | 74 | 2003-04-15 | ||||
| 22 | 7QGN|1|M | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the SmrB-bound E. coli disome - stalled 70S ribosome | Electron microscopy | 3.37 | 75 | 2022-04-27 |
| 23 | 1O0B|1|B | Glutaminyl tRNA | CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-ray diffraction | 2.7 | 74 | 2003-04-15 | ||||
| 24 | 7QG8|1|M | Transfer RNA | P-site tRNA | Escherichia coli K-12 | Bacteria | RF00005 | Structure of the collided E. coli disome - VemP-stalled 70S ribosome | Electron microscopy | 3.97 | 75 | 2022-03-16 |
| 25 | 7QGH|1|M | Transfer RNA | P-site tRNA | Escherichia coli K-12 | Bacteria | RF00005 | Structure of the E. coli disome - collided 70S ribosome | Electron microscopy | 4.48 | 75 | 2022-03-16 |
| 26 | 1EXD|1|B | GLUTAMINE TRNA APTAMER | CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-ray diffraction | 2.7 | 73 | 2000-05-15 | ||||
| 27 | 7QGR|1|M | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the SmrB-bound E. coli disome - collided 70S ribosome | Electron microscopy | 5.7 | 75 | 2022-06-22 |
Release history
| Release | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 | 3.365 | 3.366 | 3.367 | 3.368 | 3.369 | 3.370 | 3.371 | 3.372 | 3.373 |
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| Date | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 | 2024-12-11 | 2024-12-18 | 2024-12-25 | 2025-01-01 | 2025-01-08 | 2025-01-15 | 2025-01-22 | 2025-01-29 | 2025-02-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_31819.5 | NR_20.0_31819.4 | 3.236 | (26) 1EUQ|1|B, 1EUY|1|B, 1EXD|1|B, 1GSG|1|T, 1GTR|1|B, 1GTS|1|B, 1O0B|1|B, 1O0C|1|B, 1QRS|1|B, 1QRT|1|B, 1QRU|1|B, 1QTQ|1|B, 1ZJW|1|B, 2RD2|1|B, 2RE8|1|B, 4JXX|1|B, 4V7L|1|AW, 4V7L|1|AY, 4V7L|1|CW, 4V7L|1|CY, 4V7M|1|AW, 4V7M|1|CW, 5NWY|1|M, 7QG8|1|M, 7QGH|1|M, 7QGN|1|M | (1) 7QGR|1|M | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4V7L|1|AY | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 | |
| 2 | 4V7L|1|CY | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 | |
| 3 | 7QGH|1|M | Structure of the E. coli disome - collided 70S ribosome | ELECTRON MICROSCOPY | 4.48 | 75 | |
| 4 | 5NWY|1|M | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | ELECTRON MICROSCOPY | 2.9 | 75 | |
| 5 | 7QG8|1|M | Structure of the collided E. coli disome - VemP-stalled 70S ribosome | ELECTRON MICROSCOPY | 3.97 | 75 | |
| 6 | 7QGN|1|M | Structure of the SmrB-bound E. coli disome - stalled 70S ribosome | ELECTRON MICROSCOPY | 3.37 | 75 | |
| 7 | 7QGR|1|M | Structure of the SmrB-bound E. coli disome - collided 70S ribosome | ELECTRON MICROSCOPY | 5.7 | 75 | |
| 8 | 4V7L|1|CW | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 | |
| 9 | 4V7M|1|AW | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 74 | |
| 10 | 4V7L|1|AW | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 | |
| 11 | 4V7M|1|CW | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 74 | |
| 12 | 2RD2|1|B | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE | X-RAY DIFFRACTION | 2.6 | 74 | |
| 13 | 2RE8|1|B | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE | X-RAY DIFFRACTION | 2.6 | 74 | |
| 14 | 1ZJW|1|B | Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA | X-RAY DIFFRACTION | 2.5 | 74 | |
| 15 | 1O0B|1|B | CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.7 | 74 | |
| 16 | 1O0C|1|B | CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.7 | 74 | |
| 17 | 1QTQ|1|B | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG | X-RAY DIFFRACTION | 2.25 | 74 | |
| 18 | 1QRS|1|B | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-RAY DIFFRACTION | 2.6 | 74 | |
| 19 | 1QRT|1|B | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-RAY DIFFRACTION | 2.7 | 74 | |
| 20 | 1QRU|1|B | GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-RAY DIFFRACTION | 3 | 74 | |
| 21 | 1GTS|1|B | STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.8 | 74 | |
| 22 | 1GTR|1|B | STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.5 | 74 | |
| 23 | 4JXX|1|B | Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditions | X-RAY DIFFRACTION | 2.3 | 71 | |
| 24 | 1EUY|1|B | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR | X-RAY DIFFRACTION | 2.6 | 73 | |
| 25 | 1EUQ|1|B | CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR | X-RAY DIFFRACTION | 3.1 | 72 | |
| 26 | 1EXD|1|B | CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.7 | 73 | |
| 27 | 1GSG|1|T | Structure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolution | X-RAY DIFFRACTION | 2.8 | 75 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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