Equivalence class NR_20.0_31819.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1QTQ|1|B (rep) | Transfer RNA | RNA (TRNA GLN II ) | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG | X-ray diffraction | 2.25 | 1998-05-27 |
| 2 | 4JXX|1|B | Transfer RNA | RNA (71-MER) | RF00005 | Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditions | X-ray diffraction | 2.3 | 2013-05-01 | ||
| 3 | 1ZJW|1|B | Transfer RNA | Glutaminyl-tRNA | RF00005 | Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA | X-ray diffraction | 2.5 | 2005-06-07 | ||
| 4 | 4V7M|1|AW | Transfer RNA | tRNA-Gln, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3') | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
| 5 | 4V7M|1|CW | Transfer RNA | tRNA-Gln, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3') | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
| 6 | 4V7L|1|AW | Transfer RNA | tRNA-Gln, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3') | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 7 | 4V7L|1|CW | Transfer RNA | tRNA-Gln, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3') | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 8 | 1EUY|1|B | Transfer RNA | GLUTAMINYL TRNA | RF00005 | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR | X-ray diffraction | 2.6 | 2000-06-04 | ||
| 9 | 4V7L|1|AY | Transfer RNA | tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 10 | 4V7L|1|CY | Transfer RNA | tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 11 | 1EUQ|1|B | Transfer RNA | GLUTAMINYL TRNA | RF00005 | CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR | X-ray diffraction | 3.1 | 2000-06-04 | ||
| 12 | 1QRS|1|B | Transfer RNA | TRNAGLN2 | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-ray diffraction | 2.6 | 1996-12-07 |
| 13 | 1QRT|1|B | Transfer RNA | TRNAGLN2 | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-ray diffraction | 2.7 | 1996-12-07 |
| 14 | 1QRU|1|B | Transfer RNA | TRNAGLN2 | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-ray diffraction | 3 | 1996-12-07 |
| 15 | 1GTR|1|B | Transfer RNA | RNA (74-MER) | RF00005 | STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE | X-ray diffraction | 2.5 | 1995-02-07 | ||
| 16 | 2RD2|1|B | Transfer RNA | Glutamine tRNA | RF00005 | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE | X-ray diffraction | 2.6 | 2008-01-15 | ||
| 17 | 1GTS|1|B | Transfer RNA | TRNAGLN | Escherichia coli | Bacteria | RF00005 | STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE | X-ray diffraction | 2.8 | 1995-02-07 |
| 18 | 5NWY|1|M | Transfer RNA | Gln-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | Electron microscopy | 2.9 | 2017-07-19 |
| 19 | 2RE8|1|B | Transfer RNA | Glutamine tRNA | RF00005 | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE | X-ray diffraction | 2.6 | 2008-01-15 | ||
| 20 | 1GSG|1|T | Transfer RNA | TRNAGLN | RF00005 | Structure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolution | X-ray diffraction | 2.8 | 1992-02-24 | ||
| 21 | 1O0C|1|B | Transfer RNA | Glutaminyl tRNA | RF00005 | CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-ray diffraction | 2.7 | 2003-04-15 | ||
| 22 | 7QGN|1|M | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the SmrB-bound E. coli disome - stalled 70S ribosome | Electron microscopy | 3.37 | 2022-04-27 |
| 23 | 1O0B|1|B | Transfer RNA | Glutaminyl tRNA | RF00005 | CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-ray diffraction | 2.7 | 2003-04-15 | ||
| 24 | 7QG8|1|M | Transfer RNA | P-site tRNA | Escherichia coli K-12 | Bacteria | RF00005 | Structure of the collided E. coli disome - VemP-stalled 70S ribosome | Electron microscopy | 3.97 | 2022-03-16 |
| 25 | 7QGH|1|M | Transfer RNA | P-site tRNA | Escherichia coli K-12 | Bacteria | RF00005 | Structure of the E. coli disome - collided 70S ribosome | Electron microscopy | 4.48 | 2022-03-16 |
| 26 | 1EXD|1|B | Transfer RNA | GLUTAMINE TRNA APTAMER | RF00005 | CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-ray diffraction | 2.7 | 2000-05-15 | ||
| 27 | 7QGR|1|M | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the SmrB-bound E. coli disome - collided 70S ribosome | Electron microscopy | 5.7 | 2022-06-22 |
Release history
| Release | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_31819.5 | NR_20.0_31819.4 | 3.236 | (26) 5NWY|1|M, 4V7M|1|CW, 4V7M|1|AW, 4V7L|1|CY, 4V7L|1|CW, 4V7L|1|AY, 4V7L|1|AW, 4JXX|1|B, 2RE8|1|B, 2RD2|1|B, 1ZJW|1|B, 1QTQ|1|B, 1QRU|1|B, 1QRT|1|B, 1QRS|1|B, 1O0C|1|B, 1O0B|1|B, 1GTS|1|B, 1GTR|1|B, 1GSG|1|T, 1EXD|1|B, 1EUY|1|B, 1EUQ|1|B, 7QGN|1|M, 7QGH|1|M, 7QG8|1|M | (1) 7QGR|1|M | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4V7L|1|AY | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 |
| 2 | 4V7L|1|CY | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 |
| 3 | 7QG8|1|M | Structure of the collided E. coli disome - VemP-stalled 70S ribosome | ELECTRON MICROSCOPY | 3.97 | 75 |
| 4 | 7QGN|1|M | Structure of the SmrB-bound E. coli disome - stalled 70S ribosome | ELECTRON MICROSCOPY | 3.37 | 75 |
| 5 | 7QGR|1|M | Structure of the SmrB-bound E. coli disome - collided 70S ribosome | ELECTRON MICROSCOPY | 5.7 | 75 |
| 6 | 7QGH|1|M | Structure of the E. coli disome - collided 70S ribosome | ELECTRON MICROSCOPY | 4.48 | 75 |
| 7 | 5NWY|1|M | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | ELECTRON MICROSCOPY | 2.9 | 75 |
| 8 | 4V7L|1|CW | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 |
| 9 | 4V7M|1|AW | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 74 |
| 10 | 4V7L|1|AW | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 |
| 11 | 4V7M|1|CW | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 74 |
| 12 | 2RD2|1|B | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE | X-RAY DIFFRACTION | 2.6 | 74 |
| 13 | 2RE8|1|B | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE | X-RAY DIFFRACTION | 2.6 | 74 |
| 14 | 1ZJW|1|B | Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA | X-RAY DIFFRACTION | 2.5 | 74 |
| 15 | 1O0B|1|B | CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.7 | 74 |
| 16 | 1O0C|1|B | CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.7 | 74 |
| 17 | 1QTQ|1|B | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG | X-RAY DIFFRACTION | 2.25 | 74 |
| 18 | 1QRS|1|B | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-RAY DIFFRACTION | 2.6 | 74 |
| 19 | 1QRT|1|B | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-RAY DIFFRACTION | 2.7 | 74 |
| 20 | 1QRU|1|B | GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-RAY DIFFRACTION | 3 | 74 |
| 21 | 1GTS|1|B | STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.8 | 74 |
| 22 | 1GTR|1|B | STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.5 | 74 |
| 23 | 4JXX|1|B | Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditions | X-RAY DIFFRACTION | 2.3 | 71 |
| 24 | 1EUY|1|B | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR | X-RAY DIFFRACTION | 2.6 | 73 |
| 25 | 1EUQ|1|B | CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR | X-RAY DIFFRACTION | 3.1 | 72 |
| 26 | 1EXD|1|B | CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.7 | 73 |
| 27 | 1GSG|1|T | Structure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolution | X-RAY DIFFRACTION | 2.8 | 66 |