#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11VS5|A (rep)Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.X-ray diffraction3.462006-09-26
21VS7|ACrystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.X-ray diffraction3.462006-09-26
32AVY|ACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction3.462005-11-08
42AW7|ACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction3.462005-11-08
52GY9|AStructure of the 30S subunit of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152006-09-26
62GYB|AStructure of the 30S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152006-09-26
72I2P|ACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400.X-ray diffraction3.222006-10-24
82I2U|ACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400.X-ray diffraction3.222006-10-24
92QAL|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. This file contains the 30S subunit of the first 70S ribosome, with neomycin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction3.212007-09-25
102QAN|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. This file contains the 30S subunit of the second 70S ribosome, with neomycin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction3.212007-09-25
112QB9|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. This file contains the 30S subunit of the first 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction3.542007-09-25
122QBB|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. This file contains the 30S subunit of the second 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction3.542007-09-25
132QBD|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 30S subunit of the first 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction3.32007-09-25
142QBF|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 30S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction3.32007-09-25
152QBH|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). This file contains the 30S subunit of the first 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction42007-09-25
162QBJ|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). This file contains the 30S subunit of the second 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction42007-09-25
172QOU|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. This file contains the 30S subunit of the first 70S ribosome, with spectinomycin bound. The entire crystal structure contains two 70S ribosomes.X-ray diffraction3.932007-08-14
182QOW|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. This file contains the 30S subunit of the second 70S ribosome, with spectinomycin bound. The entire crystal structure contains two 70S ribosomes.X-ray diffraction3.932007-08-14
192QOY|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. This file contains the 30S subunit of the first 70S ribosome, with spectinomycin and neomycin bound. The entire crystal structure contains two 70S ribosomes.X-ray diffraction3.52007-08-14
202QP0|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. This file contains the 30S subunit of the second 70S ribosome, with spectinomycin and neomycin bound. The entire crystal structure contains two 70S ribosomes.X-ray diffraction3.52007-08-14
212VHO|AStructure of PDF binding helix in complex with the ribosome (part 3 of 4)X-ray diffraction3.742008-02-26
222VHP|AStructure of PDF binding helix in complex with the ribosome (part 4 of 4)X-ray diffraction3.742008-02-26
232WWL|AE.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 30s, The P-Site Trna And The Tnac Leader Peptide (Part 1 Of 2).Electron microscopy5.82010-04-14
242YKR|ASmall subunit ribosomal RNAEscherichia coliBacteriaRF0017730S ribosomal subunit with RsgA bound in the presence of GMPPNPElectron microscopy9.82011-08-24
252Z4K|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). This file contains the 30S subunit of the first 70S ribosome, with paromomycin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction4.452007-09-25
262Z4M|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). This file contains the 30S subunit of the second 70S ribosome, with paromomycin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.X-ray diffraction4.452007-09-25
273DF1|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. This file contains the 30S subunit of the first 70S ribosome, with hygromycin B bound. The entire crystal structure contains two 70S ribosomes.X-ray diffraction3.52008-08-19
283DF3|ACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. This file contains the 30S subunit of the second 70S ribosome, with hygromycin B bound. The entire crystal structure contains two 70S ribosomes.X-ray diffraction3.52008-08-19
293E1A|1Structure of the 30S subunit and the tRNAs of E. coli ribosome in Pre-accommodation stateElectron microscopy92009-08-18
303E1C|1Structure of the 30S subunit and the tRNAs of E. coli ribosome in Post-accommodation stateElectron microscopy92009-08-18
313FIH|ATernary complex-bound E.coli 70S ribosome. This entry consists of the 30S subunit, tRNAs and the ternary complex.Electron microscopy6.72009-03-03
323I1M|ACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192009-09-01
333I1O|ACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192009-09-01
343I1Q|ACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.812009-09-01
353I1S|ACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.812009-09-01
363I1Z|ACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.712009-09-01
373I21|ACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.712009-09-01
383IZV|AStructural insights into cognate vs. near-cognate discrimination during decoding. This entry contains the small subunit of a ribosome programmed with a near-cognate codon, A/T-site tRNA, P-site tRNA, mRNA and EF-TuElectron microscopy13.22011-03-23
393IZW|AStructural insights into cognate vs. near-cognate discrimination during decoding.This entry contains the small subunit of a ribosome programmed with a cognate codon, A/T-site tRNA, P-site tRNA, mRNA and EF-TuElectron microscopy8.252011-03-23
403J00|AStructure of the ribosome-SecYE complex in the membrane environmentElectron microscopy7.12011-04-20
413KC4|ARibosome-SecY complex. This entry 3KC4 contains 30S ribosomal subnit. The 50S ribosomal subunit can be found in PDB entry 3KCRElectron microscopy9.62010-03-02
423OAQ|ACrystal structure of the E. coli ribosome bound to telithromycin. This file contains the 30S subunit of the first 70S ribosome.X-ray diffraction3.252010-12-15
433OAR|ACrystal structure of the E. coli ribosome bound to telithromycin. This file contains the 30S subunit of the second 70S ribosome.X-ray diffraction3.252010-12-15
443OFA|ACrystal structure of the E. coli ribosome bound to chloramphenicol. This file contains the 30S subunit of the first 70S ribosome.X-ray diffraction3.192010-10-20
453OFB|ACrystal structure of the E. coli ribosome bound to chloramphenicol. This file contains the 30S subunit of the second 70S ribosome.X-ray diffraction3.192010-10-20
463OFO|ACrystal structure of the E. coli ribosome bound to erythromycin. This file contains the 30S subunit of the first 70S ribosome.X-ray diffraction3.12010-10-13
473OFP|ACrystal structure of the E. coli ribosome bound to erythromycin. This file contains the 30S subunit of the second 70S ribosome.X-ray diffraction3.12010-10-13
483OFX|ACrystal structure of the E. coli ribosome bound to clindamycin. This file contains the 30S subunit of the first 70S ribosome.X-ray diffraction3.292010-10-20
493OFY|ACrystal structure of the E. coli ribosome bound to clindamycin. This file contains the 30S subunit of the second 70S ribosomeX-ray diffraction3.292010-10-20
503OR9|ACrystal structure of the E. coli ribosome bound to CEM-101. This file contains the 30S subunit of the first 70S ribosome.X-ray diffraction3.32010-10-06
513ORA|ACrystal structure of the E. coli ribosome bound to CEM-101. This file contains the 30S subunit of the second 70S ribosome.X-ray diffraction3.32010-10-06

Release history

Release0.320.330.340.350.360.370.380.390.400.41
Date2011-08-272011-09-032011-09-102011-09-172011-09-242011-10-012011-10-082011-10-152011-10-222011-10-29

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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