Equivalence class NR_20.0_33014.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A (rep) | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | Electron microscopy | 3.2 | 2020-09-16 |
| 2 | 6KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | Electron microscopy | 3.4 | 2020-08-05 |
| 3 | 6ZQG|1|D3 | Small subunit ribosomal RNA | 18S rRNA, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | Electron microscopy | 3.5 | 2020-09-23 |
| 4 | 6LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) | Electron microscopy | 3.7 | 2020-09-16 |
| 5 | 7D4I|1|SA | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 | Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F) | Electron microscopy | 4 | 2021-10-06 |
| 6 | 6ZQD|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 | Electron microscopy | 3.8 | 2020-09-23 |
| 7 | 7AJU|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 | Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome) | Electron microscopy | 3.8 | 2020-12-30 |
| 8 | 6LQS|1|SA | Small subunit ribosomal RNA | 18S pre-rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) | Electron microscopy | 3.8 | 2020-09-16 |
| 9 | 6LQQ|1|SA+ 6LQQ|1|5A+ 6LQQ|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State B) | Electron microscopy | 4.1 | 2020-09-16 |
| 10 | 6ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4 | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S rRNA, 5ETS RNA, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2 | Electron microscopy | 3.9 | 2020-09-23 |
| 11 | 6ZQC|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1 | Electron microscopy | 3.8 | 2020-09-23 |
| 12 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | The complete structure of the small subunit processome | Electron microscopy | 3.8 | 2017-09-27 |
| 13 | 7D5S|1|SA+ 7D5S|1|5A+ 7D5S|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2) | Electron microscopy | 4.6 | 2021-10-06 |
| 14 | 5WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | Electron microscopy | 4.5 | 2017-03-29 |
| 15 | 7AJT|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 | Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome) | Electron microscopy | 4.6 | 2020-12-30 |
| 16 | 6LQT|1|SA+ 6LQT|1|3A+ 6LQT|1|5A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, U3 snoRNA, 5' ETS | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State E) | Electron microscopy | 4.9 | 2020-09-16 |
| 17 | 6LQV|1|SA+ 6LQV|1|3A+ 6LQV|1|5A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, U3 snoRNA, 5' ETS | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) | Electron microscopy | 4.8 | 2020-09-16 |
| 18 | 6ZQF|1|D3 | Small subunit ribosomal RNA | 18S rRNA, U3 snoRNA, 5ETS RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala) | Electron microscopy | 4.9 | 2020-09-23 |
| 19 | 7D5T|1|SA | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 | Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1) | Electron microscopy | 6 | 2021-10-06 |
| 20 | 5TZS|1|1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Architecture of the yeast small subunit processome | Electron microscopy | 5.1 | 2016-12-21 |
| 21 | 6ZQE|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala) | Electron microscopy | 7.1 | 2020-09-23 |
| 22 | 6LQR|1|SA+ 6LQR|1|5A+ 6LQR|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C) | Electron microscopy | 8.6 | 2020-09-16 |
| 23 | 5WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | Electron microscopy | 8.7 | 2017-03-29 |
| 24 | 7D63|1|SA+ 7D63|1|5A+ 7D63|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S preribosome with inactive Utp24 (state C) | Electron microscopy | 12.3 | 2021-10-06 |
Release history
| Release | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_33014.4 | NR_20.0_33014.3 | 3.199 | (20) 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 7AJU|1|D3, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 7AJT|1|D3, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6ZQG|1|D3, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6ZQF|1|D3, 5TZS|1|1, 6LQS|1|SA, 6ZQE|1|D3, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6ZQD|1|D3, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6ZQC|1|D3, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A | (4) 7D4I|1|SA, 7D63|1|SA+7D63|1|5A+7D63|1|3A, 7D5T|1|SA, 7D5S|1|SA+7D5S|1|5A+7D5S|1|3A | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6ZQG|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | ELECTRON MICROSCOPY | 3.5 | 1387 |
| 2 | 6ZQF|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala) | ELECTRON MICROSCOPY | 4.9 | 1392 |
| 3 | 6ZQE|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala) | ELECTRON MICROSCOPY | 7.1 | 1447 |
| 4 | 6ZQD|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 | ELECTRON MICROSCOPY | 3.8 | 1409 |
| 5 | 7AJU|1|D3 | Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome) | ELECTRON MICROSCOPY | 3.8 | 1409 |
| 6 | 7D5T|1|SA | Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1) | ELECTRON MICROSCOPY | 6 | 1189 |
| 7 | 7D4I|1|SA | Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F) | ELECTRON MICROSCOPY | 4 | 1337 |
| 8 | 6LQS|1|SA | Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) | ELECTRON MICROSCOPY | 3.8 | 1249 |
| 9 | 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State E) | ELECTRON MICROSCOPY | 4.9 | 1155 |
| 10 | 7AJT|1|D3 | Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome) | ELECTRON MICROSCOPY | 4.6 | 1327 |
| 11 | 6ZQC|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1 | ELECTRON MICROSCOPY | 3.8 | 1327 |
| 12 | 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2 | ELECTRON MICROSCOPY | 3.9 | 1198 |
| 13 | 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | ELECTRON MICROSCOPY | 3.2 | 1325 |
| 14 | 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | ELECTRON MICROSCOPY | 3.4 | 1310 |
| 15 | 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State B) | ELECTRON MICROSCOPY | 4.1 | 1323 |
| 16 | 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C) | ELECTRON MICROSCOPY | 8.6 | 1283 |
| 17 | 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) | ELECTRON MICROSCOPY | 4.8 | 950 |
| 18 | 7D63|1|SA+7D63|1|5A+7D63|1|3A | Cryo-EM structure of 90S preribosome with inactive Utp24 (state C) | ELECTRON MICROSCOPY | 12.3 | 1331 |
| 19 | 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | ELECTRON MICROSCOPY | 8.7 | 1115 |
| 20 | 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | ELECTRON MICROSCOPY | 4.5 | 1000 |
| 21 | 5TZS|1|1 | Architecture of the yeast small subunit processome | ELECTRON MICROSCOPY | 5.1 | 515 |
| 22 | 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2 | The complete structure of the small subunit processome | ELECTRON MICROSCOPY | 3.8 | 1025 |
| 23 | 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) | ELECTRON MICROSCOPY | 3.7 | 1242 |
| 24 | 7D5S|1|SA+7D5S|1|5A+7D5S|1|3A | Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2) | ELECTRON MICROSCOPY | 4.6 | 859 |
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