#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14FAU|1|A (rep)Group II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-ray diffraction2.872012-11-14
24FAW|1|AGroup II catalytic intron D1-D4-15'-R(*A*UP*UP*UP*AP*UP*UP*A)-3', Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-ray diffraction2.72012-11-14
33G78|1|AGroup II catalytic intron D1-D4-1Group II intron, Ligated EXON productOceanobacillus iheyensisBacteriaRF01998Insight into group II intron catalysis from revised crystal structureX-ray diffraction2.82010-02-16
43IGI|1|A5'-R(*CP*GP*CP*UP*CP*UP*AP*CP*UP*CP*UP*AP*U)-3', Group IIC intronTertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-ray diffraction3.122009-12-22
54E8Q|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-ray diffraction2.842012-11-14
64E8N|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-ray diffraction2.962012-11-14
74E8K|1|AGroup II catalytic intron D1-D4-15'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3', Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-ray diffraction3.032012-11-14
84FAR|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-ray diffraction2.862012-11-14
94E8T|1|AGroup II catalytic intron D1-D4-15'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3', Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-ray diffraction3.342012-11-14
104FB0|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-ray diffraction3.222012-11-14
114E8P|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-ray diffraction3.282012-11-14
124FAQ|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-ray diffraction3.112012-11-14
133BWP|1|AGroup IIC intronCrystal structure of a self-spliced group II intronX-ray diffraction3.12008-04-15
144E8R|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-ray diffraction3.362012-11-14
154DS6|1|AGroup II catalytic intron D1-D4-1Mutant Group IIC IntronOceanobacillus iheyensisBacteriaRF01998Crystal structure of a group II intron in the pre-catalytic stateX-ray diffraction3.642012-04-18
164E8M|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-ray diffraction3.52012-11-14
173EOH|1|A5'-R(*UP*UP*AP*UP*UP*A)-3', Group IIC intronRefined group II intron structureX-ray diffraction3.122008-10-28
184FAX|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-ray diffraction3.12012-11-14
193EOG|1|A5'-R(*UP*UP*AP*UP*UP*A)-3', Group IIC intronCo-crystallization showing exon recognition by a group II intronX-ray diffraction3.392008-10-28
204E8V|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+X-ray diffraction3.992012-11-14

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.44
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14FAX|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-RAY DIFFRACTION3.1392
24E8R|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-RAY DIFFRACTION3.36393
34E8P|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-RAY DIFFRACTION3.28393
44E8Q|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.84393
54E8N|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.96393
64FB0|1|AStructure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.22393
74E8M|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.5394
84FAW|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.7390
94FAR|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.86390
104FAU|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.87395
113G78|1|AInsight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.8389
123IGI|1|ATertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-RAY DIFFRACTION3.12389
134E8T|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-RAY DIFFRACTION3.34388
144E8K|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-RAY DIFFRACTION3.03388
154FAQ|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-RAY DIFFRACTION3.11396
164E8V|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+X-RAY DIFFRACTION3.99389
174DS6|1|ACrystal structure of a group II intron in the pre-catalytic stateX-RAY DIFFRACTION3.64393
183EOH|1|ARefined group II intron structureX-RAY DIFFRACTION3.12381
193EOG|1|ACo-crystallization showing exon recognition by a group II intronX-RAY DIFFRACTION3.39388
203BWP|1|ACrystal structure of a self-spliced group II intronX-RAY DIFFRACTION3.1356

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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