Equivalence class NR_20.0_35133.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2Z75|1|B (rep) | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-ray diffraction | 1.7 | 2007-09-04 |
| 2 | 2GCV|1|B | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.1 | 2006-09-26 | ||||
| 3 | 2Z74|1|B | glmS ribozyme RNA | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.2 | 2007-09-04 | ||||
| 4 | 2H0X|1|B | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.3 | 2006-09-26 | ||||
| 5 | 2H0W|1|B | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.4 | 2006-09-26 | ||||
| 6 | 2GCS|1|B | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.1 | 2006-09-26 | ||||
| 7 | 3B4B|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate with 2'5'-phosphodiester linkage, glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-ray diffraction | 2.7 | 2007-12-11 |
| 8 | 2HO6|1|B | glmS ribozyme substrate RNA, glmS ribozyme RNA | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.8 | 2006-09-26 | ||||
| 9 | 2HO7|1|B | glmS ribozyme substrate RNA, glmS ribozyme RNA | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.9 | 2006-09-26 | ||||
| 10 | 3B4A|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate RNA, glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-ray diffraction | 2.7 | 2007-12-11 |
| 11 | 4MEG|1|B | glmS triple mutant ribozyme, (121-MER) ribozyme | In vitro evolved glmS ribozyme triple mutant, magnesium ion complex | X-ray diffraction | 3.1 | 2013-10-16 | ||||
| 12 | 3B4C|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate with a 2'5'-phosphodiester linkage, glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-ray diffraction | 3 | 2007-12-11 |
| 13 | 4MEH|1|B | glmS triple mutant ribozyme, (122-MER) ribozyme | In vitro evolved glmS ribozyme triple mutant, calcium ion complex | X-ray diffraction | 3.12 | 2013-10-16 |
Release history
| Release | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4MEG|1|B | In vitro evolved glmS ribozyme triple mutant, magnesium ion complex | X-RAY DIFFRACTION | 3.1 | 121 |
| 2 | 2GCV|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 |
| 3 | 2H0W|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.4 | 122 |
| 4 | 2HO6|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.8 | 122 |
| 5 | 2HO7|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.9 | 122 |
| 6 | 3B4B|1|B | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 2.7 | 123 |
| 7 | 2GCS|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 |
| 8 | 2H0X|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.3 | 122 |
| 9 | 2Z75|1|B | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 1.7 | 123 |
| 10 | 2Z74|1|B | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.2 | 123 |
| 11 | 3B4A|1|B | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 2.7 | 121 |
| 12 | 3B4C|1|B | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 3 | 121 |
| 13 | 4MEH|1|B | In vitro evolved glmS ribozyme triple mutant, calcium ion complex | X-RAY DIFFRACTION | 3.12 | 122 |