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Equivalence class NR_20.0_37403.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18EOS|1|R (rep)RNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructM. tuberculosis RNAP elongation complex with NusG and CMPCPPElectron microscopy3.12023-02-01
28EOT|1|RRNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructM. tuberculosis RNAP elongation complex with NusGElectron microscopy3.32023-02-01
38E95|1|RRNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructMycobacterium tuberculosis RNAP elongation complexElectron microscopy2.92023-03-22
46J9E|1|IRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructCryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7Electron microscopy3.412019-07-17
58E82|1|RRNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructMycobacterium tuberculosis RNAP elongation complex with NusG transcription factorElectron microscopy3.032023-03-22
66M6C|1|RRNAThermus thermophilusCryoEM structure of Thermus thermophilus RNA polymerase elongation complexElectron microscopy3.12020-10-14
76X50|1|RRNA (20-mer)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - V stateElectron microscopy3.32021-02-03
86C6T|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHElectron microscopy3.52018-07-25
96J9F|1|IRNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructCryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7Electron microscopy3.952019-07-17
106X4Y|1|RRNA (20-mer)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - IV stateElectron microscopy3.62021-02-03
116X43|1|RRNA (20-mer)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - II stateElectron microscopy3.62021-02-03
126C6U|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliCryoEM structure of E.coli RNA polymerase elongation complex bound with NusGElectron microscopy3.72018-07-25
136C6S|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHElectron microscopy3.72018-07-25
146X4W|1|RRNA (20-mer)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - III stateElectron microscopy3.82021-02-03
156X2N|1|RRNA (20-MER)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - I stateElectron microscopy3.92021-02-03
166X2F|1|RRNA (20-MER)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - L2 stateElectron microscopy42021-02-03
176X26|1|RRNA (20-MER)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - L1 stateElectron microscopy4.12021-02-03
186ALH|1|RRNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia virus T7CryoEM structure of E.coli RNA polymerase elongation complexElectron microscopy4.42017-08-16

Release history

Release3.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.289
Date2023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_37403.3NR_20.0_37403.23.275(16) 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6X26|1|R, 6M6C|1|R, 6J9F|1|I, 6J9E|1|I, 6C6U|1|R, 6C6T|1|R, 6C6S|1|R, 6ALH|1|R, 8EOT|1|R, 8EOS|1|R(2) 8E82|1|R, 8E95|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_37403.3NR_20.0_37403.43.290(18) 8EOS|1|R, 6ALH|1|R, 8E95|1|R, 8E82|1|R, 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6X26|1|R, 6M6C|1|R, 6J9F|1|I, 6J9E|1|I, 6C6U|1|R, 6C6T|1|R, 8EOT|1|R, 6C6S|1|R(0) (1) 8SYI|1|R

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18EOT|1|RM. tuberculosis RNAP elongation complex with NusGELECTRON MICROSCOPY3.313
28EOS|1|RM. tuberculosis RNAP elongation complex with NusG and CMPCPPELECTRON MICROSCOPY3.113
36X4Y|1|RMfd-bound E.coli RNA polymerase elongation complex - IV stateELECTRON MICROSCOPY3.610
46X2F|1|RMfd-bound E.coli RNA polymerase elongation complex - L2 stateELECTRON MICROSCOPY49
56M6C|1|RCryoEM structure of Thermus thermophilus RNA polymerase elongation complexELECTRON MICROSCOPY3.110
66X2N|1|RMfd-bound E.coli RNA polymerase elongation complex - I stateELECTRON MICROSCOPY3.99
76X50|1|RMfd-bound E.coli RNA polymerase elongation complex - V stateELECTRON MICROSCOPY3.39
86C6U|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with NusGELECTRON MICROSCOPY3.710
96C6T|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHELECTRON MICROSCOPY3.510
106C6S|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHELECTRON MICROSCOPY3.710
116X43|1|RMfd-bound E.coli RNA polymerase elongation complex - II stateELECTRON MICROSCOPY3.610
126X4W|1|RMfd-bound E.coli RNA polymerase elongation complex - III stateELECTRON MICROSCOPY3.89
136J9E|1|ICryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7ELECTRON MICROSCOPY3.4112
146J9F|1|ICryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7ELECTRON MICROSCOPY3.9512
156ALH|1|RCryoEM structure of E.coli RNA polymerase elongation complexELECTRON MICROSCOPY4.410
166X26|1|RMfd-bound E.coli RNA polymerase elongation complex - L1 stateELECTRON MICROSCOPY4.19
178E82|1|RMycobacterium tuberculosis RNAP elongation complex with NusG transcription factorELECTRON MICROSCOPY3.0310
188E95|1|RMycobacterium tuberculosis RNAP elongation complexELECTRON MICROSCOPY2.910
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