Equivalence class NR_20.0_39627.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2R8S|1|R (rep) | P4-P6 RNA RIBOZYME DOMAIN | High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain | X-ray diffraction | 1.95 | 2007-12-04 | ||||
| 2 | 6D8O|1|A | Group I self-splicing intron | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant A230U | X-ray diffraction | 2.8 | 2018-07-04 | |||
| 3 | 6D8O|1|B | Group I self-splicing intron | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant A230U | X-ray diffraction | 2.8 | 2018-07-04 | |||
| 4 | 1HR2|1|B | P4-P6 DELC209 MUTANT RNA RIBOZYME DOMAIN | CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. | X-ray diffraction | 2.25 | 2001-04-12 | ||||
| 5 | 6BJX|1|A | Group I self-splicing intron P4-P6 domain | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) | X-ray diffraction | 3.14 | 2018-07-04 | |||
| 6 | 6BJX|1|B | Group I self-splicing intron P4-P6 domain | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) | X-ray diffraction | 3.14 | 2018-07-04 | |||
| 7 | 1HR2|1|A | P4-P6 DELC209 MUTANT RNA RIBOZYME DOMAIN | CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. | X-ray diffraction | 2.25 | 2001-04-12 | ||||
| 8 | 6D8M|1|B | Group I self-splicing intron | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant A125U/G126U | X-ray diffraction | 3.7 | 2018-07-04 | |||
| 9 | 6D8M|1|A | Group I self-splicing intron | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant A125U/G126U | X-ray diffraction | 3.7 | 2018-07-04 | |||
| 10 | 6D8L|1|A | Group I self-splicing intron | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) | X-ray diffraction | 3.14 | 2018-07-18 | |||
| 11 | 6D8L|1|B | Group I self-splicing intron | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) | X-ray diffraction | 3.14 | 2018-07-18 | |||
| 12 | 6D8N|1|B | Group I self-splicing intron | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant G134A/U185AA | X-ray diffraction | 3.95 | 2018-07-18 | |||
| 13 | 6D8N|1|A | Group I self-splicing intron | Tetrahymena thermophila | Group I self-splicing intron P4-P6 domain mutant G134A/U185AA | X-ray diffraction | 3.95 | 2018-07-18 | |||
| 14 | 1X8W|1|A | Tetrahymena ribozyme RNA | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||||
| 15 | 1X8W|1|D | Tetrahymena ribozyme RNA | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||||
| 16 | 1X8W|1|B | Tetrahymena ribozyme RNA | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||||
| 17 | 1X8W|1|C | Tetrahymena ribozyme RNA | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||||
| 18 | 1L8V|1|B | P4-P6 RNA ribozyme domain | Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia | X-ray diffraction | 2.8 | 2002-08-23 | ||||
| 19 | 1L8V|1|A | P4-P6 RNA ribozyme domain | Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia | X-ray diffraction | 2.8 | 2002-08-23 | ||||
| 20 | 1GID|1|B | P4-P6 RNA RIBOZYME DOMAIN | synthetic construct | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | X-ray diffraction | 2.5 | 1996-12-31 | |||
| 21 | 1GID|1|A | P4-P6 RNA RIBOZYME DOMAIN | synthetic construct | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | X-ray diffraction | 2.5 | 1996-12-31 | |||
| 22 | 1GRZ|1|A | Group I catalytic intron | LSU R-RNA GROUP I INTRON | Tetrahymena thermophila | Eukarya | RF00028 | A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME | X-ray diffraction | 5 | 1998-11-24 |
| 23 | 1GRZ|1|B | Group I catalytic intron | LSU R-RNA GROUP I INTRON | Tetrahymena thermophila | Eukarya | RF00028 | A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME | X-ray diffraction | 5 | 1998-11-24 |
Release history
| Release | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_39627.3 | NR_20.0_39627.2 | 3.31 | (19) 1GID|1|A, 1GID|1|B, 1GRZ|1|A, 1GRZ|1|B, 1HR2|1|A, 1HR2|1|B, 1L8V|1|A, 1L8V|1|B, 1X8W|1|A, 1X8W|1|B, 1X8W|1|C, 1X8W|1|D, 2R8S|1|R, 6BJX|1|A, 6BJX|1|B, 6D8M|1|A, 6D8M|1|B, 6D8O|1|A, 6D8O|1|B | (4) 6D8L|1|A, 6D8L|1|B, 6D8N|1|A, 6D8N|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_39627.3 | NR_20.0_39627.4 | 3.98 | (22) 1GID|1|A, 1GID|1|B, 1GRZ|1|A, 1GRZ|1|B, 1HR2|1|A, 1HR2|1|B, 1L8V|1|A, 1L8V|1|B, 1X8W|1|A, 1X8W|1|B, 1X8W|1|D, 2R8S|1|R, 6BJX|1|A, 6BJX|1|B, 6D8L|1|A, 6D8L|1|B, 6D8M|1|A, 6D8M|1|B, 6D8N|1|A, 6D8N|1|B, 6D8O|1|A, 6D8O|1|B | (1) 1X8W|1|C | (0) |
| NR_20.0_39627.3 | NR_20.0_54845.1 | 3.98 | (1) 1X8W|1|C | (22) 1GID|1|A, 1GID|1|B, 1GRZ|1|A, 1GRZ|1|B, 1HR2|1|A, 1HR2|1|B, 1L8V|1|A, 1L8V|1|B, 1X8W|1|A, 1X8W|1|B, 1X8W|1|D, 2R8S|1|R, 6BJX|1|A, 6BJX|1|B, 6D8L|1|A, 6D8L|1|B, 6D8M|1|A, 6D8M|1|B, 6D8N|1|A, 6D8N|1|B, 6D8O|1|A, 6D8O|1|B | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 2R8S|1|R | High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain | X-RAY DIFFRACTION | 1.95 | 159 | |
| 2 | 1HR2|1|A | CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. | X-RAY DIFFRACTION | 2.25 | 157 | |
| 3 | 1L8V|1|B | Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia | X-RAY DIFFRACTION | 2.8 | 157 | |
| 4 | 1L8V|1|A | Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia | X-RAY DIFFRACTION | 2.8 | 157 | |
| 5 | 1HR2|1|B | CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. | X-RAY DIFFRACTION | 2.25 | 158 | |
| 6 | 6D8O|1|B | Group I self-splicing intron P4-P6 domain mutant A230U | X-RAY DIFFRACTION | 2.8 | 158 | |
| 7 | 1GID|1|B | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | X-RAY DIFFRACTION | 2.5 | 158 | |
| 8 | 6D8N|1|B | Group I self-splicing intron P4-P6 domain mutant G134A/U185AA | X-RAY DIFFRACTION | 3.95 | 159 | |
| 9 | 6D8M|1|B | Group I self-splicing intron P4-P6 domain mutant A125U/G126U | X-RAY DIFFRACTION | 3.7 | 159 | |
| 10 | 6D8M|1|A | Group I self-splicing intron P4-P6 domain mutant A125U/G126U | X-RAY DIFFRACTION | 3.7 | 158 | |
| 11 | 1GID|1|A | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | X-RAY DIFFRACTION | 2.5 | 158 | |
| 12 | 6D8O|1|A | Group I self-splicing intron P4-P6 domain mutant A230U | X-RAY DIFFRACTION | 2.8 | 158 | |
| 13 | 6D8N|1|A | Group I self-splicing intron P4-P6 domain mutant G134A/U185AA | X-RAY DIFFRACTION | 3.95 | 159 | |
| 14 | 6BJX|1|A | Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) | X-RAY DIFFRACTION | 3.14 | 158 | |
| 15 | 6D8L|1|A | Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) | X-RAY DIFFRACTION | 3.14 | 158 | |
| 16 | 6D8L|1|B | Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) | X-RAY DIFFRACTION | 3.14 | 158 | |
| 17 | 6BJX|1|B | Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) | X-RAY DIFFRACTION | 3.14 | 158 | |
| 18 | 1GRZ|1|A | A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME | X-RAY DIFFRACTION | 5 | 247 | |
| 19 | 1GRZ|1|B | A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME | X-RAY DIFFRACTION | 5 | 247 | |
| 20 | 1X8W|1|A | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 242 | |
| 21 | 1X8W|1|B | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 247 | |
| 22 | 1X8W|1|D | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 242 | |
| 23 | 1X8W|1|C | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 237 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: