#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15VYC|1|i2 (rep)Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
25VYC|1|i3Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
35VYC|1|i5Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
45VYC|1|i1Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
55VYC|1|i6Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
65VYC|1|i4Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
76ZMI|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexElectron microscopy2.62020-08-19
86ZM7|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexElectron microscopy2.72020-07-29
96ZLW|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunitElectron microscopy2.62020-07-29
106ZVH|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960EDF1-ribosome complexElectron microscopy2.92020-08-19
116Z6N|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)Electron microscopy2.92020-07-29
126ZOJ|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, composite mapElectron microscopy2.82020-07-22
136ZP4|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2Electron microscopy2.92020-07-29
146QZP|1|S2Small subunit ribosomal RNA18S rRNA (1740-MER)Homo sapiensEukaryaRF01960High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92019-04-24
156ZME|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexElectron microscopy32020-08-12
166Z6L|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of human CCDC124 bound to 80S ribosomesElectron microscopy32020-07-29
176EK0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92018-01-24
186ZON|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1Electron microscopy32020-07-29
196ZMO|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexElectron microscopy3.12020-08-19
206Z6M|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1Electron microscopy3.12020-07-29
216Y2L|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in POST stateElectron microscopy32020-04-15
226OM0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
236OLE|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
246ZN5|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2Electron microscopy3.22020-07-29
256Y0G|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in classical-PRE stateElectron microscopy3.22020-04-15
266ZMT|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complexElectron microscopy32020-08-19
271VX5|1|218S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit.Electron microscopy3.52014-06-18
283J74|1|S218S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2Electron microscopy3.52014-06-18
296OLG|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)Electron microscopy3.42019-06-19
306OLI|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)Electron microscopy3.52019-06-19
316Y57|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in hybrid-PRE stateElectron microscopy3.52020-04-15
326G18|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State CElectron microscopy3.62018-06-06
336G5I|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State RElectron microscopy3.52018-06-06
344UG0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960STRUCTURE OF THE HUMAN 80S RIBOSOMEElectron microscopy3.62015-06-10
356IP8|1|2mSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)Electron microscopy3.92019-05-29
366IP5|1|2mSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)Electron microscopy3.92019-05-29
371VX2|1|218S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.Electron microscopy3.92014-06-18
383J73|1|S218S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complexElectron microscopy3.92014-06-18
396G5H|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureElectron microscopy3.62018-06-06
406ZOK|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, focused on bodyElectron microscopy2.82020-07-29
416OM7|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsElectron microscopy3.72019-06-19
426OLZ|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAElectron microscopy3.92019-06-19
435AJ0|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo electron microscopy of actively translating human polysomes (POST state).Electron microscopy3.52015-05-20
446OLF|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsElectron microscopy3.92019-06-19
455A2Q|1|2Small subunit ribosomal RNA18S RRNAHomo sapiensEukaryaRF01960Structure of the HCV IRES bound to the human ribosomeElectron microscopy3.92015-07-15
466YBW|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of a human 48S translational initiation complex - 40S bodyElectron microscopy3.12020-09-16
476G51|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State DElectron microscopy4.12018-06-06
486G4S|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State BElectron microscopy42018-06-06
496IP6|1|2mSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)Electron microscopy4.52019-05-29
505OA3|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human 40S-eIF2D-re-initiation complexElectron microscopy4.22017-08-09
515LKS|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure-function insights reveal the human ribosome as a cancer target for antibioticsElectron microscopy3.62017-04-26
526G53|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State EElectron microscopy4.52018-06-06
536G4W|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State AElectron microscopy4.52018-06-06
544V6X|1|B2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the human 80S ribosomeElectron microscopy52014-07-09
556ZOL|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, focused on headElectron microscopy2.82020-07-22
565T2C|1|AASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960CryoEM structure of the human ribosome at 3.6 Angstrom resolutionElectron microscopy3.62017-01-25
576FEC|1|ASmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human cap-dependent 48S pre-initiation complexElectron microscopy6.32018-03-14
585A8L|1|BSmall subunit ribosomal RNAHUMAN 18S RIBOSOMAL RNAHomo sapiensEukaryaRF01960Human eRF1 and the hCMV nascent peptide in the translation termination complexElectron microscopy3.82015-12-02

Release history

Release3.144
Date2020-09-16

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16G4W|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State AELECTRON MICROSCOPY4.51563
26G51|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State DELECTRON MICROSCOPY4.11659
35A8L|1|BHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.867
46Y2L|1|S2Structure of human ribosome in POST stateELECTRON MICROSCOPY31713
56QZP|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91707
66EK0|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91706
76Z6L|1|S2Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY31740
86Z6N|1|S2Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.91740
96ZMO|1|S2SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.11740
106ZMI|1|S2SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.61740
116ZM7|1|S2SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.71740
126ZME|1|S2SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY31740
136ZVH|1|2EDF1-ribosome complexELECTRON MICROSCOPY2.91740
146OLF|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.91680
156OLE|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11680
166OLI|1|S2Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.51680
176Y57|1|S2Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.51658
186Y0G|1|S2Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.21697
195AJ0|1|B1Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.51708
206OLG|1|B1Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.41708
216OLZ|1|B1Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.91708
226IP5|1|2mCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.91742
236IP6|1|2mCryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)ELECTRON MICROSCOPY4.51742
246IP8|1|2mCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.91742
255LKS|1|S2Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.61742
264UG0|1|S2STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.61742
275T2C|1|AACryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.61742
286FEC|1|AHuman cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.31776
295VYC|1|i1Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
305VYC|1|i2Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
315VYC|1|i4Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
325VYC|1|i3Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
335VYC|1|i5Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
345VYC|1|i6Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
351VX2|1|2Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.ELECTRON MICROSCOPY3.91742
363J73|1|S2Structure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.91742
373J74|1|S2Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.51742
381VX5|1|2Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit.ELECTRON MICROSCOPY3.51742
394V6X|1|B2Structure of the human 80S ribosomeELECTRON MICROSCOPY51861
406G5H|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureELECTRON MICROSCOPY3.61665
415OA3|1|2Human 40S-eIF2D-re-initiation complexELECTRON MICROSCOPY4.21661
426ZOJ|1|2SARS-CoV-2-Nsp1-40S complex, composite mapELECTRON MICROSCOPY2.81704
436ZOK|1|2SARS-CoV-2-Nsp1-40S complex, focused on bodyELECTRON MICROSCOPY2.81232
445A2Q|1|2Structure of the HCV IRES bound to the human ribosomeELECTRON MICROSCOPY3.91665
456ZON|1|2SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1ELECTRON MICROSCOPY31721
466Z6M|1|S2Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.11740
476YBW|1|AStructure of a human 48S translational initiation complex - 40S bodyELECTRON MICROSCOPY3.11196
486ZP4|1|2SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2ELECTRON MICROSCOPY2.91721
496ZMT|1|2SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complexELECTRON MICROSCOPY31569
506ZLW|1|2SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunitELECTRON MICROSCOPY2.61665
516ZN5|1|2SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2ELECTRON MICROSCOPY3.21671
526ZOL|1|2SARS-CoV-2-Nsp1-40S complex, focused on headELECTRON MICROSCOPY2.8472
536G5I|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.51657
546G18|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State CELECTRON MICROSCOPY3.61658
556OM7|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.71680
566OM0|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11680
576G53|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State EELECTRON MICROSCOPY4.51659
586G4S|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State BELECTRON MICROSCOPY41613
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