Equivalence class NR_20.0_51549.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1PJG|1|A (rep) | 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG | X-ray diffraction | 1.15 | 2003-12-09 | ||||
| 2 | 1PJO|1|A | 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT | X-ray diffraction | 1.1 | 2003-12-09 | ||||
| 3 | 1G4Q|1|A | 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG | X-ray diffraction | 1.15 | 2003-07-08 | ||||
| 4 | 1JB8|1|A | 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation | X-ray diffraction | 2.38 | 2003-07-01 | ||||
| 5 | 7NRP|1|A | RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | Synthetic | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-ray diffraction | 2.67 | 2022-06-22 |
Release history
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1PJO|1|A | Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT | X-RAY DIFFRACTION | 1.1 | 14 |
| 2 | 1G4Q|1|A | RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG | X-RAY DIFFRACTION | 1.15 | 10 |
| 3 | 1PJG|1|A | RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG | X-RAY DIFFRACTION | 1.15 | 14 |
| 4 | 7NRP|1|A | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-RAY DIFFRACTION | 2.67 | 10 |
| 5 | 1JB8|1|A | The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation | X-RAY DIFFRACTION | 2.38 | 10 |