BGSU RNA Site //

Equivalence class NR_20.0_56118.2 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
15MPS|1|6 (rep)U6 spliceosomal RNASaccharomyces cerevisiae strain T.52_2H chromosome XII sequence, U2 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00026Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
25GMK|1|E+ 5GMK|1|LU6 spliceosomal RNA + U2 splicesomal small nuclear RNAU6 snRNA, U2 snRNA, Intron_BPS, 5'-Splicing SiteSaccharomyces cerevisiaeEukaryaRF00026 + RF00004Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
35LQW|1|6+ 5LQW|1|2U6 spliceosomal RNA + U2 splicesomal small nuclear RNAU6 snRNA, U2 snRNA, actin pre-mRNASaccharomyces cerevisiaeEukaryaRF00026 + RF00004yeast activated spliceosomeElectron microscopy5.82016-10-05

Release history

Release2.111
Date2017-01-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_56118.2NR_20.0_56118.12.111(2) 5LQW|1|6+5LQW|1|2, 5GMK|1|E+5GMK|1|L(1) 5MPS|1|6(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_56118.2NR_20.0_56118.32.112(3) 5MPS|1|6, 5LQW|1|6+5LQW|1|2, 5GMK|1|E+5GMK|1|L(0) (1) 5WSG|1|E

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15GMK|1|E+5GMK|1|LCryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4103
25MPS|1|6Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.8599
35LQW|1|6+5LQW|1|2yeast activated spliceosomeELECTRON MICROSCOPY5.8102