BGSU RNA Site //

Equivalence class NR_20.0_56118.6 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
16ASO|1|I (rep)U6 spliceosomal RNASaccharomyces cerevisiae strain HB_S_GIMBLETTROAD_9 chromosome XII sequenceSaccharomyces cerevisiaeEukaryaRF00026Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNAX-ray diffraction2.712018-05-09
25VSU|1|IU6 spliceosomal RNASaccharomyces cerevisiae strain T8 chromosome XII sequenceSaccharomyces cerevisiaeEukaryaRF00026Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNAX-ray diffraction3.12018-05-09
35MPS|1|6U6 spliceosomal RNASaccharomyces cerevisiae strain T.52_2H chromosome XII sequence, U2 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00026Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
45YLZ|1|DU6 spliceosomal RNAU6 snRNA, mRNA/intron lariat, U2 snRNASaccharomyces cerevisiaeEukaryaRF00026Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromElectron microscopy3.62018-07-18
55Y88|1|DU6 spliceosomal RNAU6 snRNA, U2 snRNA, Intron lariatSaccharomyces cerevisiaeEukaryaRF00026Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromElectron microscopy3.462018-08-01
65GMK|1|E+ 5GMK|1|LU6 spliceosomal RNA + U2 splicesomal small nuclear RNAU6 snRNA, U2 snRNA, Intron_BPS, 5'-Splicing SiteSaccharomyces cerevisiaeEukaryaRF00026 + RF00004Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
75WSG|1|EU6 spliceosomal RNASaccharomyces cerevisiae S288c SNR6 snRNA, RNA (91-MER), 3'-intron-lariat, 5'-intron-lariatSaccharomyces cerevisiaeEukaryaRF00026Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionElectron microscopy42017-01-25
85LQW|1|6+ 5LQW|1|2U6 spliceosomal RNA + U2 splicesomal small nuclear RNAU6 snRNA, U2 snRNA, actin pre-mRNASaccharomyces cerevisiaeEukaryaRF00026 + RF00004yeast activated spliceosomeElectron microscopy5.82016-10-05

Release history

Release3.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.97
Date2018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_56118.6NR_20.0_56118.53.33(7) 6ASO|1|I, 5YLZ|1|D, 5WSG|1|E, 5VSU|1|I, 5MPS|1|6, 5LQW|1|6+5LQW|1|2, 5GMK|1|E+5GMK|1|L(1) 5Y88|1|D(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_56118.6NR_20.0_02335.13.98(1) 5VSU|1|I(7) 5WSG|1|E, 5YLZ|1|D, 5GMK|1|E+5GMK|1|L, 5MPS|1|6, 5Y88|1|D, 6ASO|1|I, 5LQW|1|6+5LQW|1|2(0)
NR_20.0_56118.6NR_20.0_56904.13.98(1) 5LQW|1|6+5LQW|1|2(7) 5WSG|1|E, 5YLZ|1|D, 5GMK|1|E+5GMK|1|L, 5VSU|1|I, 5Y88|1|D, 6ASO|1|I, 5MPS|1|6(0)
NR_20.0_56118.6NR_20.0_82055.13.98(1) 6ASO|1|I(7) 5Y88|1|D, 5GMK|1|E+5GMK|1|L, 5MPS|1|6, 5WSG|1|E, 5YLZ|1|D, 5LQW|1|6+5LQW|1|2, 5VSU|1|I(0)
NR_20.0_56118.6NR_20.0_83830.13.98(5) 5MPS|1|6, 5YLZ|1|D, 5WSG|1|E, 5GMK|1|E+5GMK|1|L, 5Y88|1|D(3) 6ASO|1|I, 5VSU|1|I, 5LQW|1|6+5LQW|1|2(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15LQW|1|6+5LQW|1|2yeast activated spliceosomeELECTRON MICROSCOPY5.8102
25YLZ|1|DCryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.6103
35WSG|1|ECryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4103
45GMK|1|E+5GMK|1|LCryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4103
55Y88|1|DCryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromELECTRON MICROSCOPY3.46101
65MPS|1|6Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.8599
76ASO|1|IStructure of yeast U6 snRNP with 3'-phosphate terminated U6 RNAX-RAY DIFFRACTION2.7169
85VSU|1|IStructure of yeast U6 snRNP with 2'-phosphate terminated U6 RNAX-RAY DIFFRACTION3.172