Equivalence class NR_20.0_63911.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3SYW|1|A+ 3SYW|1|B (rep) | RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3') | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-RAY DIFFRACTION | 1.57 | 2012-04-25 | ||||
| 2 | 3SJ2|1|A+ 3SJ2|1|B | RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*GP*GP*CP*GP*GP*CP*GP*GP*GP*UP*CP*C)-3'), RNA (5'-R(P*GP*GP*GP*CP*CP*GP*GP*CP*GP*GP*CP*GP*GP*GP*UP*CP*C)-3') | A Crystal Structure of a Model of the Repeating r(CGG) Transcript Found in Fragile X Syndrome | X-RAY DIFFRACTION | 1.36 | 2011-08-03 | ||||
| 3 | 4J50|1|A+ 4J50|1|B | RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') | synthetic construct | Synthetic | Crystal Structure of an Expanded RNA CAG Repeat | X-RAY DIFFRACTION | 1.65 | 2013-02-20 | ||
| 4 | 4YN6|1|A+ 4YN6|1|B | RNA (5'-R(P*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') | synthetic construct | Synthetic | Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs) | X-RAY DIFFRACTION | 2.3 | 2015-04-22 | ||
| 5 | 3SZX|1|A+ 3SZX|1|B | RNA (5'-R(P*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3') | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-RAY DIFFRACTION | 2.2 | 2012-04-25 |
Release history
| Release | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_63911.2 | NR_all_63911.1 | 2.20 | (4) 4J50|1|A+4J50|1|B, 3SZX|1|A+3SZX|1|B, 3SYW|1|A+3SYW|1|B, 3SJ2|1|A+3SJ2|1|B | (1) 4YN6|1|A+4YN6|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_63911.2 | NR_20.0_45159.1 | 2.93 | (3) 3SYW|1|A+3SYW|1|B, 4J50|1|A+4J50|1|B, 4YN6|1|A+4YN6|1|B | (2) 3SZX|1|A+3SZX|1|B, 3SJ2|1|A+3SJ2|1|B | (0) |
| NR_20.0_63911.2 | NR_20.0_62516.1 | 2.93 | (1) 3SJ2|1|A+3SJ2|1|B | (4) 3SZX|1|A+3SZX|1|B, 4YN6|1|A+4YN6|1|B, 3SYW|1|A+3SYW|1|B, 4J50|1|A+4J50|1|B | (0) |
| NR_20.0_63911.2 | NR_20.0_86744.1 | 2.93 | (1) 3SZX|1|A+3SZX|1|B | (4) 3SJ2|1|A+3SJ2|1|B, 4J50|1|A+4J50|1|B, 3SYW|1|A+3SYW|1|B, 4YN6|1|A+4YN6|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3SYW|1|A+3SYW|1|B | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-RAY DIFFRACTION | 1.57 | 21 |
| 2 | 4YN6|1|A+4YN6|1|B | Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs) | X-RAY DIFFRACTION | 2.3 | 19 |
| 3 | 4J50|1|A+4J50|1|B | Crystal Structure of an Expanded RNA CAG Repeat | X-RAY DIFFRACTION | 1.65 | 19 |
| 4 | 3SJ2|1|A+3SJ2|1|B | A Crystal Structure of a Model of the Repeating r(CGG) Transcript Found in Fragile X Syndrome | X-RAY DIFFRACTION | 1.36 | 19 |
| 5 | 3SZX|1|A+3SZX|1|B | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-RAY DIFFRACTION | 2.2 | 19 |