#IFECompound(s)RNA source organismTitleMethodResolutionDate
16ZMI|1|L5+ 6ZMI|1|L8 (rep)28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.62020-08-19
26ZM7|1|L5+ 6ZM7|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.72020-07-29
36Y6X|1|L5+ 6Y6X|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensTetracenomycin X bound to the human ribosomeELECTRON MICROSCOPY2.82020-07-08
46Z6N|1|L5+ 6Z6N|1|L828S rRNA, 5.8S rRNAHomo sapiensCryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.92020-07-29
56QZP|1|L5+ 6QZP|1|L828S rRNA (3773-MER), 5.8S rRNA (156-MER)Homo sapiensHigh-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.92019-04-24
66ZME|1|L5+ 6ZME|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY32020-08-12
76Z6L|1|L5+ 6Z6L|1|L828S rRNA, 5.8S rRNAHomo sapiensCryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY32020-07-29
86EK0|1|L5+ 6EK0|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHigh-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.92018-01-24
96XA1|1|L5+ 6XA1|1|L828S rRNA, 5.8S rRNAHomo sapiensStructure of a drug-like compound stalled human translation termination complexELECTRON MICROSCOPY2.82020-10-07
106ZMO|1|L5+ 6ZMO|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.12020-08-19
116Z6M|1|L5+ 6Z6M|1|L828S rRNA, 5.8S rRNAHomo sapiensCryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.12020-07-29
126OLE|1|t+ 6OLE|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.12019-06-19
136OM0|1|t+ 6OM0|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.12019-06-19
146Y2L|1|L5+ 6Y2L|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure of human ribosome in POST stateELECTRON MICROSCOPY32020-04-15
156LQM|1|2+ 6LQM|1|828S rRNA, 5.8S rRNAHomo sapiensCryo-EM structure of a pre-60S ribosomal subunit - state CELECTRON MICROSCOPY3.092020-08-26
166Y0G|1|L5+ 6Y0G|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.22020-04-15
176LU8|1|2+ 6LU8|1|828S rRNA, 5.8S rRNAHomo sapiensCryo-EM structure of a human pre-60S ribosomal subunit - state AELECTRON MICROSCOPY3.132020-08-26
186LSR|1|2+ 6LSR|1|828S rRNA, 5.8S rRNAHomo sapiensCryo-EM structure of a pre-60S ribosomal subunit - state BELECTRON MICROSCOPY3.132020-08-26
196LSS|1|2+ 6LSS|1|828S rRNAHomo sapiensCryo-EM structure of a pre-60S ribosomal subunit - state preAELECTRON MICROSCOPY3.232020-08-26
206OLI|1|t+ 6OLI|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.52019-06-19
216OLG|1|A2+ 6OLG|1|A328S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.42019-06-19
226Y57|1|L5+ 6Y57|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.52020-04-15
235T2C|1|A+ 5T2C|1|C28S rRNA, 5.8S rRNAHomo sapiensCryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.62017-01-25
246OM7|1|t+ 6OM7|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.72019-06-19
254UG0|1|L5+ 4UG0|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensSTRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.62015-06-10
266OLF|1|t+ 6OLF|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.92019-06-19
276W6L|1|t+ 6W6L|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensCryo-EM structure of the human ribosome-TMCO1 transloconELECTRON MICROSCOPY3.842020-09-02
286IP5|1|1A+ 6IP5|1|1C28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.92019-05-29
296IP8|1|1A+ 6IP8|1|1C28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.92019-05-29
306OLZ|1|A2+ 6OLZ|1|A328S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.92019-06-19
315AJ0|1|A2+ 5AJ0|1|A328S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensCryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.52015-05-20
325LKS|1|L5+ 5LKS|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.62017-04-26
336IP6|1|1A+ 6IP6|1|1C28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensCryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)ELECTRON MICROSCOPY4.52019-05-29
344V6X|1|A5+ 4V6X|1|A828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure of the human 80S ribosomeELECTRON MICROSCOPY52014-07-09
356SXO|1|L528S ribosomal RNA including ES27L-B (2839-3265)Homo sapiensCryo-EM structure of the human Ebp1-ribosome complexELECTRON MICROSCOPY3.32020-02-19
365A8L|1|A28S RIBOSOMAL RNAHomo sapiensHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.82015-12-02

Release history

Release3.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.163
Date2020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-27

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15A8L|1|AHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.8253
26LQM|1|2+6LQM|1|8Cryo-EM structure of a pre-60S ribosomal subunit - state CELECTRON MICROSCOPY3.093433
36Z6M|1|L5+6Z6M|1|L8Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.13772
46ZME|1|L5+6ZME|1|L8SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY33773
56ZMO|1|L5+6ZMO|1|L8SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.13773
66ZMI|1|L5+6ZMI|1|L8SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.63773
76ZM7|1|L5+6ZM7|1|L8SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.73773
86Z6L|1|L5+6Z6L|1|L8Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY33772
96Z6N|1|L5+6Z6N|1|L8Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.93772
106Y6X|1|L5+6Y6X|1|L8Tetracenomycin X bound to the human ribosomeELECTRON MICROSCOPY2.83773
116EK0|1|L5+6EK0|1|L8High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.93672
126QZP|1|L5+6QZP|1|L8High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.93696
136Y57|1|L5+6Y57|1|L8Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.53574
146Y0G|1|L5+6Y0G|1|L8Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.23644
156Y2L|1|L5+6Y2L|1|L8Structure of human ribosome in POST stateELECTRON MICROSCOPY33613
166XA1|1|L5+6XA1|1|L8Structure of a drug-like compound stalled human translation termination complexELECTRON MICROSCOPY2.83390
176IP8|1|1A+6IP8|1|1CCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.93667
186IP5|1|1A+6IP5|1|1CCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.93717
196IP6|1|1A+6IP6|1|1CCryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)ELECTRON MICROSCOPY4.53667
205LKS|1|L5+5LKS|1|L8Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.63776
215T2C|1|A+5T2C|1|CCryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.63776
224UG0|1|L5+4UG0|1|L8STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.63776
234V6X|1|A5+4V6X|1|A8Structure of the human 80S ribosomeELECTRON MICROSCOPY54298
245AJ0|1|A2+5AJ0|1|A3Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.53612
256OLG|1|A2+6OLG|1|A3Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.43612
266OLZ|1|A2+6OLZ|1|A3Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.93643
276OM0|1|t+6OM0|1|DHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.13607
286OLE|1|t+6OLE|1|DHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.13607
296OLI|1|t+6OLI|1|DStructure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.53607
306OLF|1|t+6OLF|1|DHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.93607
316OM7|1|t+6OM7|1|DHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.73607
326W6L|1|t+6W6L|1|DCryo-EM structure of the human ribosome-TMCO1 transloconELECTRON MICROSCOPY3.843510
336LSS|1|2+6LSS|1|8Cryo-EM structure of a pre-60S ribosomal subunit - state preAELECTRON MICROSCOPY3.233383
346LU8|1|2+6LU8|1|8Cryo-EM structure of a human pre-60S ribosomal subunit - state AELECTRON MICROSCOPY3.133386
356LSR|1|2+6LSR|1|8Cryo-EM structure of a pre-60S ribosomal subunit - state BELECTRON MICROSCOPY3.133384
366SXO|1|L5Cryo-EM structure of the human Ebp1-ribosome complexELECTRON MICROSCOPY3.3268